Locus 6821

Sequence ID 3L_DroMel_CAF1
Location 18,323,064 – 18,323,178
Length 114
Max. P 0.910719
window11069

overview

Window 9

Location 18,323,064 – 18,323,178
Length 114
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 77.74
Mean single sequence MFE -21.12
Consensus MFE -13.63
Energy contribution -13.19
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.98
Structure conservation index 0.65
SVM decision value 1.07
SVM RNA-class probability 0.910719
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18323064 114 - 23771897
GACGAAGACAUGUGUUGUAAGUUGUUUUCAGUUCAAAUAAAUUACCAAAUAAUUACUGAAAAUAUAAUAAGUUAGGCGCUGGAACUAACAAUUUAUGUUGCUACAUGUUAUGAU
......(((((((((.((((((((((((((((......................))))))))).......(((((.........))))))))))))...)).)))))))..... ( -22.45)
>DroSec_CAF1 107406 91 - 1
GACGAAGACAUGU---GUAAGUUGUUUUCAGCUCCAAUAAAA-CCGAAAAAUUUACUGGAAAU-------------------AACCAACAAAUUAUGUUGCUACAUGUUAUGGA
..(.(.(((((((---(...(((((((((((...........-............))))))))-------------------)))(((((.....))))).)))))))).).). ( -20.20)
>DroSim_CAF1 117254 91 - 1
GACGAAGACAUGU---GUAAGUUGUUUUCAGCUCAAAUAAAG-CCCAAAUAAUUACUGGAAAU-------------------AACCAACAAUUUAUGUUGCUACAUGUUAUGGU
.((.(.(((((((---(...(((((((((((...........-............))))))))-------------------)))(((((.....))))).)))))))).).)) ( -20.70)
>consensus
GACGAAGACAUGU___GUAAGUUGUUUUCAGCUCAAAUAAAA_CCCAAAUAAUUACUGGAAAU___________________AACCAACAAUUUAUGUUGCUACAUGUUAUGGU
......(((((((..........((((((((........................))))))))......................(((((.....)))))..)))))))..... (-13.63 = -13.19 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:38 2006