Locus 6820

Sequence ID 3L_DroMel_CAF1
Location 18,321,652 – 18,321,752
Length 100
Max. P 0.908096
window11068

overview

Window 8

Location 18,321,652 – 18,321,752
Length 100
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.84
Mean single sequence MFE -34.35
Consensus MFE -17.74
Energy contribution -17.55
Covariance contribution -0.19
Combinations/Pair 1.17
Mean z-score -2.49
Structure conservation index 0.52
SVM decision value 1.06
SVM RNA-class probability 0.908096
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18321652 100 - 23771897
AUAUUCCAUCGUUUGUUGUUA---UGGCCGCAGUUUAUGAUGCGUAUAGGGCGCUCU-----GCUCU-------CCACUUGCCAGUUCAUAUUUUG-----CGGCUGACAUUUAUGGUGG
.....(((((((....((((.---.((((((((..(((((.(((...(((((.....-----)))))-------.....)))....)))))..)))-----)))))))))...))))))) ( -36.00)
>DroPse_CAF1 127862 113 - 1
AUAUUCCAUCGUUUGUUGUUGGUCCUGUCGCAGUUUAUGAUGCGUACAGGCCGCCCGCCGCCGCUCU-------ACUCCUGACAGUUCAUAUUUCGUUCGUCGGCCGACAGUUAUGGUGG
.....(((((((((((((..((.(((((((((........)))).)))))))....((((.((..(.-------.....(((....)))......)..)).))))))))))..))))))) ( -35.20)
>DroEre_CAF1 101757 107 - 1
AUAUUCCAUCGUUUGUUGUUA---UGGCCGCAGUUUAUGAUGCGUAUAGGGUGCUCC-----GCUCUCCGCUUUCCACUUGCCAGUUCAUAUAUUG-----CGGCUGACAUUUAUGGUGG
.....(((((((....((((.---.(((((((((.(((((.(((...((((((...)-----))))).))).....(((....)))))))).))))-----)))))))))...))))))) ( -36.30)
>DroYak_CAF1 112245 100 - 1
AUAUUCCACCGUUUGUUGUUA---UGGCCGCAGUUUAUGAUGCGUAUAGGGUGCUCU-----GCUCU-------CCACUUGCCAGUUCAUAUUUUG-----CGGCUGACAUUUAUGGUGG
.....(((((((....((((.---.((((((((..(((((.(((...(((((.....-----)))))-------.....)))....)))))..)))-----)))))))))...))))))) ( -37.30)
>DroAna_CAF1 100834 95 - 1
AUAUUCCAUCGUUUGUUGUUA---UUGCCGCAGUUUAUGAUGCGUAUAGGGAGCUCC-----------------ACACUUGCCAGUUCAUAUUUUG-----CGACUGACAUUUAUGGUGG
.....(((((((....(((((---..(.(((((..(((((.(((.....((....))-----------------.....)))....)))))..)))-----)).))))))...))))))) ( -26.10)
>DroPer_CAF1 129321 106 - 1
AUAUUCCAUCGCUUGUUGUUGGUCCUGUCGCAGUUUAUGAUGCGUACAGGCCGCCCGCCGCCGC--------------CCGUCAGUUCAUAUUUCGUUCGUCGGCCGACAGUUAUGGUGG
.....((((.(((.((((..((.(((((((((........)))).)))))))....((((.((.--------------.((.............))..)).))))))))))).))))... ( -35.22)
>consensus
AUAUUCCAUCGUUUGUUGUUA___UGGCCGCAGUUUAUGAUGCGUAUAGGGCGCUCC_____GCUCU_______CCACUUGCCAGUUCAUAUUUUG_____CGGCUGACAUUUAUGGUGG
.....(((((((....(((((.....(((((((..(((((.((...((((...........................))))...)))))))..))).....)))))))))...))))))) (-17.74 = -17.55 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:37 2006