| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,313,395 – 18,313,507 |
| Length | 112 |
| Max. P | 0.838278 |
| Location | 18,313,395 – 18,313,507 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.65 |
| Mean single sequence MFE | -40.72 |
| Consensus MFE | -24.44 |
| Energy contribution | -23.47 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.838278 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18313395 112 + 23771897 AAAUUUAGG---CAAGACAACAUCCGGACACGGGGGACACGUGUAAUUGUUGAUAGCCGCGGUUGGUUGACAAUAUGUCAAGCGACAACGCCGACUUGUGAUACCGAGGG-----GUGCG .......((---(....(((((.....((((((....).)))))...)))))...)))((.((((.(((((.....))))).))))...(((..((((......)))).)-----)))). ( -38.30) >DroPse_CAF1 117917 120 + 1 AAAUUUCGGGGACUAAACACGACCCGGACACGGGGGACACGUGUAAUUGUUGAUAGCCAACGUUGGUUGACAAUAUGUCAAAUGACGACAACAAACGGCACGGCCCAGGGUCUGGGUCCG .......(....).......(((((((((.(..(((...(((((..((((((.((((((....))))))......((((....)))).))))))...))))).)))..)))))))))).. ( -46.70) >DroSec_CAF1 97553 112 + 1 AAAUUUCGG---CAAGACACCAUCCGGACACGGGGGACACGUGUAAUUGUUGAUAGCCGCCGUUGGUUCACAAUAUGUCAAGCGACAACGACGCGUUCUGAUACCGAGGG-----GUGCG .....((((---(((....((....))((((((....).)))))..)))))))..(((.((.((((((((.((..((((..........))))..)).))).))))).))-----).)). ( -34.20) >DroEre_CAF1 93730 112 + 1 AAAUUUCGG---CAAGACACCAUCCGGACACGGGGGACACGUGUAAUUGUUGAUAGCCGCCGCUGGUUGACAAUAUGUCAAGCGACAGCGGCGAGUCCUGCCACCGAGGG-----UUGCG .......((---((.(((.((....))((((((....).))))).............((((((((.(((((.....)))))....)))))))).))).))))........-----..... ( -42.20) >DroAna_CAF1 93408 108 + 1 AAAUUUCGG---CAAGACACGACCCGGACACGGGGGACACGUGUAAUUGUUGAUAGCCAACGUUGGUUGACAAUAUGUCAACUGACAGCAACAAAGUCUCACACUGAGGG------U--- .....((((---(((.(((((.((((....)))).....)))))..)))))))..(((...((..((((((.....))))))..))...........(((.....)))))------)--- ( -37.20) >DroPer_CAF1 119100 120 + 1 AAAUUUCGGGGACUAAACACGACCCGGACACGGGGGACACGUGUAAUUGUUGAUAGCCAACGUUGGUUGACAAUAUGUCAAAUGACGACAACAAACGGCACGACCCAGGGUCUGGGUCCG .......(....).......(((((((((...(((....(((((..((((((.((((((....))))))......((((....)))).))))))...))))).)))...))))))))).. ( -45.70) >consensus AAAUUUCGG___CAAGACACCACCCGGACACGGGGGACACGUGUAAUUGUUGAUAGCCAACGUUGGUUGACAAUAUGUCAAGCGACAACAACAAAUUCUGACACCGAGGG_____GUGCG ......................(((((((((((....).)))))..((((((.((((((....))))))......((((....)))).)))))).........))..))).......... (-24.44 = -23.47 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:36 2006