| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,310,175 – 18,310,289 |
| Length | 114 |
| Max. P | 0.567486 |
| Location | 18,310,175 – 18,310,289 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.36 |
| Mean single sequence MFE | -17.20 |
| Consensus MFE | -4.69 |
| Energy contribution | -4.53 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.27 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18310175 114 + 23771897 UAAGCACGCAAAUGCUAACCCAACAAGUAAG-AACUUAUCCUCGGCAAGCCGAAGCUCACAUACCCUUGCAAAUUAAAUUAGUCAAAUUAAACAC-AAAGCAUUAUAUUUUAAAAA---- ..........((((((..........(((((-.........((((....)))).(....).....)))))...........((........))..-..))))))............---- ( -12.60) >DroSec_CAF1 93954 114 + 1 UAAACACGCAAAUGCUAACCAAACAAGUAAG-AACUAAUCCUGGGCAAGCCGAAGCUUUCAUACCCUUGCAAAUUAAAUUAGUCAAAUUAAAGAC-AAAGCAUUAUAUUUUAAAAA---- ..........((((((..........(((((-..(((....)))(.((((....)))).).....)))))...........(((........)))-..))))))............---- ( -15.80) >DroSim_CAF1 103393 111 + 1 UAAACACGCAAAUGCUAACCAAACAAGUAAG-AACUAAUCCUCGGCAAGCCGAAGAUAACAUACCUUUGCAAAUUAAAUUAGUCAAAUUAAACAC-AAAGCAUUAU---UUAAAAA---- ..........((((((.........(((...-.))).(((.((((....)))).)))......................................-..))))))..---.......---- ( -13.50) >DroEre_CAF1 90534 115 + 1 UAAGCACGCAAAUGCCAAACAAACAAGAAAGGAAACUUUCUUCAGCAAGUCGAAGCUUACAUACCCUUGCAGA---AACUA--UACAUUAAAAAAUACUAUGCUGUAUUUGGGAUAAGAU (((((..((....)).........(((((((....)))))))............)))))....(((.(((((.---...((--(..........))).....)))))...)))....... ( -22.50) >DroYak_CAF1 100474 111 + 1 UAAGCACGCAAAUGCCAA---AACAGAGAAGAAACCUAUCUUUGGCAAGCCGAAGCUUGCAUACCCUUGCAGC---AACUA--UAAAUUAAAAAG-GGAACGAUGUAUACAGAAUAAGAA ...(((((..........---..((((((((....)).))))))((((((....))))))...(((((.....---.....--.........)))-))..)).))).............. ( -21.61) >consensus UAAGCACGCAAAUGCUAACCAAACAAGUAAG_AACUUAUCCUCGGCAAGCCGAAGCUUACAUACCCUUGCAAAUUAAAUUAGUCAAAUUAAAAAC_AAAGCAUUAUAUUUUAAAAA____ .......((....)).............................(((((................))))).................................................. ( -4.69 = -4.53 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:35 2006