Locus 6816

Sequence ID 3L_DroMel_CAF1
Location 18,307,545 – 18,307,643
Length 98
Max. P 0.706102
window11064

overview

Window 4

Location 18,307,545 – 18,307,643
Length 98
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 94.81
Mean single sequence MFE -26.03
Consensus MFE -22.85
Energy contribution -23.13
Covariance contribution 0.28
Combinations/Pair 1.12
Mean z-score -1.42
Structure conservation index 0.88
SVM decision value 0.36
SVM RNA-class probability 0.706102
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18307545 98 - 23771897
CC--CCUUCCUCAUCAAAAUCCCGCUUCCUGCACCUUGGCUUCGUGUCAAGUGCGGCGGCGAUGAUGCCAGAGAAGUAUCUGAAUAAAAAAUAAUGCAAU
..--.(((((((((((...(((((((....((((.(((((.....)))))))))))))).)))))))..)).))))........................ ( -26.50)
>DroSec_CAF1 91371 98 - 1
CC--CCUUCCUCAUCAAAAUCCCGCUUCCUGCACCUUGGCUUCGUGUCAAGUGCGGCGGCGAUGAUGCCAGAGAAGUAUCUGAAUAAAAAAUAAUGCAAU
..--.(((((((((((...(((((((....((((.(((((.....)))))))))))))).)))))))..)).))))........................ ( -26.50)
>DroSim_CAF1 100778 98 - 1
CC--CCUUCCUCAUCAAAAUCCCGCUUCCUGCACCUUGGCUUCGUGUCAAGUGCGGCGGCGAUGAUGCCAGAGAAGUAUCUGAAUAAAAAAUAAUGCAAU
..--.(((((((((((...(((((((....((((.(((((.....)))))))))))))).)))))))..)).))))........................ ( -26.50)
>DroEre_CAF1 88029 98 - 1
CC--CCUUCCUCAUCAAAAUCCCGCUUCCUGCACCUUGGCUUCGUGUCAAGUGCGGCGGCGAUGAUGCCAGAGAAGUAUCUGAAUAAAAAAUAAUGCAAU
..--.(((((((((((...(((((((....((((.(((((.....)))))))))))))).)))))))..)).))))........................ ( -26.50)
>DroYak_CAF1 97903 99 - 1
CCC-CCUUCCUUAUCAAAAUGCCGCUUCCUGCACCUUGGCUUCGUGUCAAGUGCGGCGGCGAUGAUGCCAGAGAAGUAUCUGAAUAAAAAAUAAUGCAAU
...-.(((((((((((...(((((((....((((.(((((.....)))))))))))))))).)))))..)).))))........................ ( -27.90)
>DroAna_CAF1 88415 97 - 1
CUCCCCUCAC---UCGGAGUCCUGCUUCCUGCACCUUUGCUUCGUGUCAAGUGCGGCGGCGAUGAUGCCAGAGAAGUAUCUGAAUAAAAAAUAAUGCAAU
..........---(((((....(((((((((((.(.(((((((((.......)))).))))).).)).))).)))))))))))................. ( -22.30)
>consensus
CC__CCUUCCUCAUCAAAAUCCCGCUUCCUGCACCUUGGCUUCGUGUCAAGUGCGGCGGCGAUGAUGCCAGAGAAGUAUCUGAAUAAAAAAUAAUGCAAU
...........(((((...(((((((....((((.(((((.....)))))))))))))).))))))).((((......)))).................. (-22.85 = -23.13 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:33 2006