Locus 6815

Sequence ID 3L_DroMel_CAF1
Location 18,306,718 – 18,306,817
Length 99
Max. P 0.953943
window11063

overview

Window 3

Location 18,306,718 – 18,306,817
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 96.77
Mean single sequence MFE -36.22
Consensus MFE -33.22
Energy contribution -33.62
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.92
SVM decision value 1.44
SVM RNA-class probability 0.953943
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18306718 99 - 23771897
UGCCUCGUCCUUGGCAUUUUGCGUGCAGCCACCAAGGACAACUCGGUAAUGCUCCCUUUUUUCCCGCUCGCUGGGUGGGAUAGUGCUACUGGGGUUCGU
......((((((((....(((....)))...))))))))..(((((((..(((........(((((((.....))))))).)))..)))))))...... ( -35.30)
>DroSec_CAF1 90560 99 - 1
UGCCUCGUCCUUGGCAUUUUGCGUGCAGCCACCAAGGACAACUCGGUAAUGCUCCCUUUUUUCCCGCUCGCUGGGUGGGAUAGUGCUACUGGGGUUCGU
......((((((((....(((....)))...))))))))..(((((((..(((........(((((((.....))))))).)))..)))))))...... ( -35.30)
>DroSim_CAF1 99976 99 - 1
UGCCUCGUCCUUGGCAUUUUGCGUGCAGCCACCAAGGACAACUCGGUAAUGCUCCCUUUUUUCCCGCUCACUGGGUGGGAUAGUGCUACUGGGGUUCGU
......((((((((....(((....)))...))))))))..(((((((..(((........(((((((.....))))))).)))..)))))))...... ( -35.30)
>DroEre_CAF1 87246 96 - 1
UGCCUCGUCCUUGGCAUUUUGCGUGCAGC---CAAGGACAACUCGGAAAUGCUCCCUUUUUUCCCGCUCGCCGGGUGGGAUAGUGCUGCUGGGGUUCGU
.((((((((((((((............))---)))))))...........((..(((....(((((((.....))))))).)).)..)).))))).... ( -36.50)
>DroYak_CAF1 97105 99 - 1
UGCCUCGUCCUUGGCAUUUUGCGUGCAGCCACCAAGGACAACUCGGUAAUGCUCCCUUUUUUCCCGCUCGCUGGGUGGGAGAGUGCUACUGGGGUUCGU
......((((((((....(((....)))...))))))))..(((((((..((((.......(((((((.....)))))))))))..)))))))...... ( -38.71)
>consensus
UGCCUCGUCCUUGGCAUUUUGCGUGCAGCCACCAAGGACAACUCGGUAAUGCUCCCUUUUUUCCCGCUCGCUGGGUGGGAUAGUGCUACUGGGGUUCGU
......((((((((....(((....)))...))))))))..(((((((..(((........(((((((.....))))))).)))..)))))))...... (-33.22 = -33.62 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:32 2006