| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,300,539 – 18,300,641 |
| Length | 102 |
| Max. P | 0.559526 |
| Location | 18,300,539 – 18,300,641 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 72.46 |
| Mean single sequence MFE | -13.39 |
| Consensus MFE | -6.12 |
| Energy contribution | -6.18 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18300539 102 + 23771897 ------AAAGA----CAAAAAAGU-CACCAAGCUCAAUUGAGCAAAG--AGAUACGCAUAUUUUCUCAAU---AAUCCUUCAAUCGGUAAAUGCGCCAAACAAAAAAAAAAAAAAACA ------...((----(......))-)(((..((((....))))...(--(((...........))))...---............))).............................. ( -15.30) >DroPse_CAF1 102257 109 + 1 UCUUUCUCCAC-----G--AAAAUGCCCAAAACUCAAUUGUGCAAAACGAAAUGUGCAUAAAAUACCAAACAGAUCCCUUCAAUCGCAAAAUGCGCAA--CGAAAAAAAAAAAAGAAA (((((......-----.--....(((.(((.......))).)))........(((((((...............................))))))).--...........))))).. ( -10.88) >DroSec_CAF1 84285 103 + 1 ------AACAAAAAAAAAAUAAGU-CACCAAGCUCAAUUGAGCAAAG--AGAUACGCAUAUAUUCUCAAU---AAUCCCUCAAUCGCAAAAUGCGCCAA---AAAAAAAAUAUAGACG ------................((-(.....((((....))))...(--(((...........))))...---...........(((.....)))....---............))). ( -15.20) >DroSim_CAF1 93684 101 + 1 ------AACAA-----AAAUAAGU-CGCCAAGCUCAAUUGAGCAAAG--AGAUACGCAUAUUUUCUCAAU---AAUCCUUCAAUCGCUAAAUGCGCCAAACAAAAAAAAAUGUAAACG ------.....-----......(.-(((...((((....))))...(--(((...........))))...---...................))).)..................... ( -12.80) >DroEre_CAF1 81204 95 + 1 ------AAC----------AAAGU-AUCUACGCUCAAUUGAGCAAUG--AGAUACGCAUAUUUUCCCAAU---AAUCCUCCAAUCGGUAAAUGCGCCAACCAAA-AAAAUUGAAGACG ------..(----------((.((-((((..((((....))))....--))))))((.(((((.((....---............)).))))).))........-....)))...... ( -16.49) >DroYak_CAF1 90655 96 + 1 ------AAA----------AAAAU-GACCAAGUUCGAUUGAGCAAAA--CGAUACGCAUAUUUUCCCAAU---AAUCCUUCAAUCGGUAAAUGCGCCAACCGAAAAAAAUAUGAGACG ------...----------.....-......((((....))))....--.....(.((((((((......---..........(((((..........)))))..)))))))).)... ( -9.67) >consensus ______AACAA_____A__AAAGU_CACCAAGCUCAAUUGAGCAAAG__AGAUACGCAUAUUUUCCCAAU___AAUCCUUCAAUCGCUAAAUGCGCCAA_CAAAAAAAAAAAAAGACG ...............................((((....))))...........(((((...............................)))))....................... ( -6.12 = -6.18 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:27 2006