Locus 6810

Sequence ID 3L_DroMel_CAF1
Location 18,295,646 – 18,295,757
Length 111
Max. P 0.623096
window11055

overview

Window 5

Location 18,295,646 – 18,295,757
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.72
Mean single sequence MFE -38.72
Consensus MFE -15.56
Energy contribution -18.12
Covariance contribution 2.56
Combinations/Pair 1.10
Mean z-score -2.46
Structure conservation index 0.40
SVM decision value 0.18
SVM RNA-class probability 0.623096
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18295646 111 - 23771897
CUG-GCACCCUCUU---UCUGUCCAGUUAGUAUGCUAAUUUGCUCAGGCUUUUAACGCCUUACGACUACAUUUUAUGGUCAGUCAGGUGUCAGAAA-GGCAU-GAGGUGUU---CCCUCC
..(-(.((((((..---.(((..(((((((....)))).)))..)))((((((.((((((.(((((((.......))))).)).))))))...)))-)))..-)))).)).---)).... ( -34.80)
>DroPse_CAF1 95720 114 - 1
CUG-GCCGCGUCUUGGCCGUGGCCAGUUAGUAUGCUAAUUUCCCGGGCCUCUUAACGCCUAAGUA--ACGUUUUAUGGCCAGUCAGGUGUCAGA---GGCAGCGAGCCGGUUGCUUUUCC
(((-((((((((((((((.((((.((((((....)))))).....((((....((((........--.))))....)))).)))).).)))).)---))).))).))))).......... ( -40.10)
>DroEre_CAF1 76553 111 - 1
CUG-GCACCCUCUU---UCUGUCCAGUUAGUAUGCUAAUUUGCCCAGCCUUUUAACGCCUUACGACUACAUUUUAUGGUCAGUCAGGUGUCAGGAA-GGCAA-GAGGUGUU---CCCUCC
..(-(.((((((((---..((..(((((((....)))).)))..))(((((((.((((((.(((((((.......))))).)).))))))..))))-)))))-)))).)).---)).... ( -36.80)
>DroYak_CAF1 85801 112 - 1
CUGGGCACCCUCUU---ACUGUCCAGUUAGUAUGCUAAUUUGCCCAGCCUUUUAACGCCUUGCGACUACAUUUUAUGGUCAGUCAGGUGUCAGAAA-GGCAG-GAGGUGUU---CCCUCC
.((((((......(---((((......)))))........))))))(((((((.((((((.(((((((.......))))).)).))))))..))))-))).(-((((....---.))))) ( -42.04)
>DroAna_CAF1 77591 107 - 1
-----CACCCUCGU---CUUGGCCUGUUAGUAUGCUAAUUUCCACUGCCUUUUAACGCCUUACGACUACAUUUUAUGGUCAGUCAGGUGUCAGAAAAGGGAA-GAGG-GUG---CACCCC
-----(((((((.(---(.(((...(((((....)))))..)))...((((((.((((((.(((((((.......))))).)).))))))...)))))))).-))))-)))---...... ( -38.40)
>DroPer_CAF1 96899 114 - 1
CUG-GCCGCGUCUUGGCCGUGGCCAGUUAGUAUGCUAAUUUCCCGGGCCUCUUAACGCCUAAGUA--ACGCUUUAUGGCCAGUCAGGUGUCAGA---GGCAGUGAGCCGGUUGCUUUUCC
(((-(((((.......(((.((..((((((....)))))).)))))((((((..((((((.....--..(((....))).....)))))).)))---))).))).))))).......... ( -40.20)
>consensus
CUG_GCACCCUCUU___CCUGGCCAGUUAGUAUGCUAAUUUCCCCAGCCUUUUAACGCCUUACGACUACAUUUUAUGGUCAGUCAGGUGUCAGAAA_GGCAG_GAGGUGUU___CCCUCC
........((((........((...(((((....)))))..))...(((.(((.((((((.(((((((.......))))).)).))))))...))).)))...))))............. (-15.56 = -18.12 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:24 2006