| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,017,288 – 2,017,389 |
| Length | 101 |
| Max. P | 0.885711 |
| Location | 2,017,288 – 2,017,389 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 77.38 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -18.53 |
| Energy contribution | -17.85 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.885711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2017288 101 - 23771897 CGAUGAUGCCUAUGGGCGACUUCGCACAUCGCGUUAAACCAAUACAUAUAUAUAUAUA--UAUAAGUGUGAGUACAUACUUAUGUGUGUAGUGGCGGUUGGUU ...((((((..(((.(((....))).))).))))))(((((((.(((.....((((((--((((((((((....)))))))))))))))))))...))))))) ( -35.20) >DroEre_CAF1 74080 79 - 1 CGAUGAUGCCUAUGGGCGACUUCGCACAUCGCGUUGAACCAAUAUAUAUAUAUGUGU------------------------GUGGGUGUAGUGGCGGUUGGUU (((.(.((((....)))).).)))((.(((((.....(((.(((((((....)))))------------------------)).)))......)))))))... ( -20.30) >DroYak_CAF1 70617 101 - 1 CGAUGAUGCCUAUGGCCGACUUCGCACAUCGCGUUGAACCAAUAUACAUAUAUGUAUAUGUAUG--AGUGUGUAUAAACUUAUGGGUGUAGUGGCGGUUGGUU .............(((((((((((((((((...........(((((((....))))))).((((--(((........)))))))))))).)))).)))))))) ( -27.00) >consensus CGAUGAUGCCUAUGGGCGACUUCGCACAUCGCGUUGAACCAAUAUAUAUAUAUGUAUA__UAU____GUG_GUA_A_ACUUAUGGGUGUAGUGGCGGUUGGUU ...((((((..(((.(((....))).))).))))))(((((((.(((.(((((.((((......................)))).))))))))...))))))) (-18.53 = -17.85 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:21 2006