Locus 6808

Sequence ID 3L_DroMel_CAF1
Location 18,293,039 – 18,293,137
Length 98
Max. P 0.686804
window11053

overview

Window 3

Location 18,293,039 – 18,293,137
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.01
Mean single sequence MFE -24.41
Consensus MFE -13.34
Energy contribution -13.15
Covariance contribution -0.19
Combinations/Pair 1.16
Mean z-score -2.28
Structure conservation index 0.55
SVM decision value 0.32
SVM RNA-class probability 0.686804
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18293039 98 - 23771897
AAUGGCAUUUAUUGUGAUUUGCAUUUUAACGCAUAGAUGCGUUUUUUGU-GCAAUUGCAUUUC-AAA------UUGGUCAUUGCCC-UGCUC--AAUUUUAAUGCCG-CU----------
...((((((...((..(((.((((...((((((....))))))....))-)))))..))....-(((------(((..((......-))..)--))))).)))))).-..---------- ( -27.50)
>DroPse_CAF1 92154 117 - 1
AAUGCCAUUUAUUUUGAUUUGCAUUUUAACGCUCAAAUGCGUUUUUUGUUGCGAUUGCAUUUC-GUAUUGUAUUUGGUCAUUGACUUUGGCC--AAUUUCAAUGCUGGAUAAUUUCGUAU
....(((.......((..(((((....(((((......)))))......)))))...))....-((((((...(((((((.......)))))--))...)))))))))............ ( -29.10)
>DroSim_CAF1 84936 98 - 1
AAUGGCAUUUAUUGUGAUUUGCAUUUUAACGCUUAGAUGCGUUUUUUGU-GCAAUUGCAUUUU-AAA------UAGGUCAUUGCCC-UGCGC--AAUUUAAAUGCGG-AU----------
(((((((((((..(((..((((((...(((((......)))))....))-))))...)))..)-)))------)..))))))....-..(((--(.......)))).-..---------- ( -27.20)
>DroEre_CAF1 73836 98 - 1
AAUGGCAUUUAUUGUGAUUUGCAUUUUAACGCUUAGAUGCGUUUUUUGU-GCAAUUGCAUUUC-AAA------UUGGUCAUUGCCC-UGCGC--AAUUUAAAAGCGA-CU----------
((((((......((..(((.((((...(((((......)))))....))-)))))..))....-...------...))))))....-..(((--.........))).-..---------- ( -22.59)
>DroYak_CAF1 83067 97 - 1
AAUGGCAUUUAUUGUGAUUUGCAUUUUAACGCUCAGAUGCGUUUUUUGU-GCAAUUGCAUUUC-AAA------UUGGUCAUUGCCC-UGCGC--AAUUUAAA-GGAA-CU----------
((((((......((..(((.((((...(((((......)))))....))-)))))..))....-...------...))))))..((-(....--.......)-))..-..---------- ( -21.99)
>DroAna_CAF1 75032 96 - 1
AAUGGUAUUUAUUGUGAUUUGCAUUUUAACGCUCAGAUGCGUUUUUUGU-UCAAUUGCAUUCCUGAA------AUGGUCAUUGCCC-UGUGCCUAAUAUUAGUC----------------
...(((((....((..(((.(((....(((((......)))))...)))-..)))..))........------..(((....))).-.)))))...........---------------- ( -18.10)
>consensus
AAUGGCAUUUAUUGUGAUUUGCAUUUUAACGCUCAGAUGCGUUUUUUGU_GCAAUUGCAUUUC_AAA______UUGGUCAUUGCCC_UGCGC__AAUUUAAAUGCGG_CU__________
....(((......((((((.(((....(((((......)))))...))).((....)).................))))))......))).............................. (-13.34 = -13.15 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:22 2006