Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,292,234 – 18,292,326 |
Length | 92 |
Max. P | 0.999856 |
Location | 18,292,234 – 18,292,326 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 96.45 |
Mean single sequence MFE | -25.18 |
Consensus MFE | -24.54 |
Energy contribution | -24.77 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -2.24 |
Structure conservation index | 0.97 |
SVM decision value | 4.27 |
SVM RNA-class probability | 0.999856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18292234 92 + 23771897 GCCAUUGUUGUUCUGUCGACGUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCAGCUUGAA .((((.((((......))))))))(((((((...........(((((((.....))))))).....((((((....)))))))))))))... ( -25.70) >DroSec_CAF1 76156 92 + 1 GCCAUUGUUGUUCUGUCGACAUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCAGCUUGAA .((((.((((......))))))))(((((((...........(((((((.....))))))).....((((((....)))))))))))))... ( -26.10) >DroSim_CAF1 84167 92 + 1 GCCAUUGUUGUUCUGUCGACAUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCAGCUUGAA .((((.((((......))))))))(((((((...........(((((((.....))))))).....((((((....)))))))))))))... ( -26.10) >DroEre_CAF1 73113 92 + 1 GCCAUUGUUGUUGUGUGGACAUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCAGCUUGAA .((((.(((........)))))))(((((((...........(((((((.....))))))).....((((((....)))))))))))))... ( -23.30) >DroYak_CAF1 82262 92 + 1 GCCAUUGUUGUUGUGUCGACAUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCGGCUUGAA .((((.((((......))))))))(((((((...........(((((((.....))))))).....((((((....)))))))))))))... ( -25.40) >DroAna_CAF1 74252 92 + 1 CCCAUUGUUGUUGUGUCGACAUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCAGCAACAU .((((.((((......))))))))..(((((...........(((((((.....))))))).....((((((....)))))))))))..... ( -24.50) >consensus GCCAUUGUUGUUCUGUCGACAUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCAGCUUGAA .((((.((((......))))))))(((((((...........(((((((.....))))))).....((((((....)))))))))))))... (-24.54 = -24.77 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:21 2006