| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,283,778 – 18,283,875 |
| Length | 97 |
| Max. P | 0.619494 |
| Location | 18,283,778 – 18,283,875 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.37 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -21.52 |
| Energy contribution | -21.36 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.619494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18283778 97 - 23771897 AGGCCAUAAAUUAGCCCGCAUACUGGCAUCAGGUGGAAACGCAAUGAUUGAAGGCCAAG-----------------------AGUUUGGGUAAAAAACCCACUCACACCCGGAGCAAAGU .((((...((((((((........))).....(((....)))..)))))...))))..(-----------------------(((..((((.....))))))))................ ( -28.80) >DroSec_CAF1 67783 97 - 1 AGGCCAUAAAUUAGCCCGCAUACUGGCAUCAGGUGGAAAGGCAAUGAUUGAAGGCCAAG-----------------------AGUUUGGGUAAAAAACUCACUCACACCCGGAGCAAAGU .((((...((((((((..(...(((....)))...)...)))..)))))...))))..(-----------------------(((((.......)))))).(((.......)))...... ( -23.60) >DroSim_CAF1 75522 97 - 1 AGGCCAUAAAUUAGCCCGCAUACUGGCAUCAGGUGGAAACGCAAUGAUUGAAGGCCAAG-----------------------AGUUUGGGUAAAAAACUCACUCACACCCGGAGCAAAGU .((((...((((((((........))).....(((....)))..)))))...))))..(-----------------------(((((.......)))))).(((.......)))...... ( -26.60) >DroEre_CAF1 64808 94 - 1 GGGCCAUAAAUUAGCCCGCAUGCUGGCAUCAGGUGGAAACGCAAUGAUUGAAGGCCAAG-----------------------AGUUUGGGUAAAAAACUCACG---ACUCGGCGCAAAGU ((((.........))))((..((((((((((.(((....)))..)))).....)))..(-----------------------(((((((((.....))))).)---)))))))))..... ( -30.50) >DroYak_CAF1 74004 94 - 1 AGGCCAUAAAUUAGCCCGCAUGCUGGCAUCAGGUGGAAACGCAAUGAUUGAAGGCCAAG-----------------------AGUUUGGGUAAAAAACUCACG---ACUCGGCGCAAAGU .((((...((((((((.(....).))).....(((....)))..)))))...))))..(-----------------------(((((((((.....))))).)---)))).......... ( -30.50) >DroAna_CAF1 66918 117 - 1 AGGCCAUAAAUUAGCCCGCAUACUGGCAUCAGGUGGAAACGCAAUGAUUGAGGGGCUAAACAGUGGGAGGAGGCCACUCUCUAGUUCGAGUAAAAAACUCAAG---GCUCAAGGCAAAGU ..(((.....(((((((((......))((((.(((....)))..))))....)))))))....(((((((((....))).)).....((((.....))))...---.)))).)))..... ( -35.80) >consensus AGGCCAUAAAUUAGCCCGCAUACUGGCAUCAGGUGGAAACGCAAUGAUUGAAGGCCAAG_______________________AGUUUGGGUAAAAAACUCACG___ACCCGGAGCAAAGU .((((...((((((((.(....).))).....(((....)))..)))))...))))...........................((((((((...............)))))).))..... (-21.52 = -21.36 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:20 2006