Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,282,296 – 18,282,387 |
Length | 91 |
Max. P | 0.814470 |
Location | 18,282,296 – 18,282,387 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 95.16 |
Mean single sequence MFE | -24.08 |
Consensus MFE | -20.79 |
Energy contribution | -21.15 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.73 |
Structure conservation index | 0.86 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18282296 91 + 23771897 CGCAGUGCGCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAACCAGCUUCGGUAGUCUGAAGUGACUGUUGACGUGCUGUCCAC .((((..((((((((((.....(((((....)))))....))))).......(((((((....))))))).....))).))..)))).... ( -24.70) >DroSec_CAF1 66397 91 + 1 CGCAGGGCGCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAACCAGCUUCGGUAGUCUGAAGUGACUGUUGACGUGCUGUCCAC ....(((((((.((((.(((..(((((....)))))................(((((((....)))))))...))))))).))).)))).. ( -24.10) >DroSim_CAF1 74032 91 + 1 CGCAGGGCGCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAACCAGCUUCGGUAGUCUGAAGUGACUGUUGACGUGCUGUCCAC ....(((((((.((((.(((..(((((....)))))................(((((((....)))))))...))))))).))).)))).. ( -24.10) >DroEre_CAF1 63465 91 + 1 GGCAGUGCGCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAACCAGCUUCGGUAGUCUGAAGUGACUGCUGACGUGCUGUCCAC (((((..(((.((((.((....(((((....))))).....))....)))).)).(((((((((......))))))))).)..)))))... ( -31.20) >DroYak_CAF1 72571 91 + 1 CGCAGUGCGCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAAGCAGCUUCGGUAGUCUGAAGUGACUGUUGACGUGCUGUCCAC .((((..((((((((((.....(((((....)))))....)))))...((..(((((((....)))))))..)).))).))..)))).... ( -26.00) >DroAna_CAF1 65769 87 + 1 CGCA----GCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAACCAGCUACGGUAGUCUGAAGUGAAUGUUGACGUGAUGUCCCU ((((----(((((((.((....(((((....))))).....))....)))).(((.(((....))).)))...))))).)).......... ( -14.40) >consensus CGCAGUGCGCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAACCAGCUUCGGUAGUCUGAAGUGACUGUUGACGUGCUGUCCAC .((((..((((((((((.....(((((....)))))....))))).......(((((((....))))))).....))).))..)))).... (-20.79 = -21.15 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:19 2006