Locus 6804

Sequence ID 3L_DroMel_CAF1
Location 18,281,990 – 18,282,090
Length 100
Max. P 0.747759
window11049

overview

Window 9

Location 18,281,990 – 18,282,090
Length 100
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 80.62
Mean single sequence MFE -20.20
Consensus MFE -16.42
Energy contribution -16.38
Covariance contribution -0.04
Combinations/Pair 1.07
Mean z-score -1.60
Structure conservation index 0.81
SVM decision value 0.47
SVM RNA-class probability 0.747759
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18281990 100 - 23771897
UAAUGAAAGUGUGAGCUUGGAAACGAGUAAGGAGGGGAGUUCAAUAAACCCUUGAACGUGCACUGAAAAAUAAAUUUGGUA-AUACU---GGAUACCUGGAUUA
.......(((((..(((((....)))))...(((((............)))))......)))))........(((((((((-.....---...)))).))))). ( -22.50)
>DroSec_CAF1 66095 96 - 1
UAAUGAAAGUGUGAGCUUGGAAACGAGCAAGGAGGGGAGUUCAAUAAAC-CUUGAAUGUGCACUAGAAA--AAAUUUAGAAUGUGCUCUAGAAUAU-----UUA
.......(((((..(((((....)))))..........((((((.....-.))))))..))))).....--...((((((......))))))....-----... ( -21.60)
>DroSim_CAF1 73729 97 - 1
UAAUGAAAGUGUGAGCUUGGAAACGAGCAAGGAGGGGAGUUCAAUAAACCCUUGAAUGUGCACUAGAAA--AAAUUUAGAAUGUGCUCUAGAAUAU-----UUA
.......(((((..(((((....)))))...(((((............)))))......))))).....--...((((((......))))))....-----... ( -24.80)
>DroEre_CAF1 63166 93 - 1
UAAUGAAAGUGUGAGCUUG---GCGAGUAAGGAGGGCAGUUCAAUAAACCCUUGAAAGUGCACUAUGAA--AAAUUUGGGA-AAACU---GCAUACUAC--UUU
.......((((((((.((.---.(((((....((.(((.(((((.......)))))..))).)).....--..)))))...-)).))---.))))))..--... ( -13.80)
>DroYak_CAF1 72263 96 - 1
UAAUGAAAGUGUGAGCUUGCAAGCGAGUAAGGAGGGAAGUUCAAUAAACCCUUCAAUGUGCACUAAGAA--AAAAAUAGAA-AAACU---GGAUUCCAC--UUU
.....((((((.(((((((....)))))..((((((............))))))...............--..........-.....---....)))))--))) ( -18.30)
>consensus
UAAUGAAAGUGUGAGCUUGGAAACGAGUAAGGAGGGGAGUUCAAUAAACCCUUGAAUGUGCACUAAAAA__AAAUUUAGAA_AUACU___GAAUAC_____UUA
.......(((((..(((((....)))))...(((((............)))))......)))))........................................ (-16.42 = -16.38 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:18 2006