Locus 6803

Sequence ID 3L_DroMel_CAF1
Location 18,281,002 – 18,281,099
Length 97
Max. P 0.916276
window11048

overview

Window 8

Location 18,281,002 – 18,281,099
Length 97
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 89.21
Mean single sequence MFE -15.33
Consensus MFE -13.56
Energy contribution -13.42
Covariance contribution -0.14
Combinations/Pair 1.05
Mean z-score -1.91
Structure conservation index 0.88
SVM decision value 1.11
SVM RNA-class probability 0.916276
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18281002 97 + 23771897
UAAAUGAGACAAAUAUUUUUCAAUAACCGAC-------------UCCAACUGAAAAGUAACUUGUCAAAUUGAUUUAAAAAUUCAUAAAUCAACUGAAACUUGCUCUGCU
.....(((.(((.....(((((......(((-------------....(((....))).....)))...((((((((........)))))))).))))).)))))).... ( -14.90)
>DroSec_CAF1 65080 97 + 1
UAAAUGAGACAAAUAUUUUUCAAUAGACGAC-------------UCCAACUGAAAAGUAACUUGUCAAAUUGAUUUAAAAAUUCAUAAAUCAACUGGAACUUGCUCUGCU
.....(((.(((.....(((((...(((((.-------------....(((....)))...)))))...((((((((........)))))))).))))).)))))).... ( -15.20)
>DroSim_CAF1 72741 97 + 1
UAAAUGAGACAAAUAUUUUUUAAUAGCCGAC-------------UCCAACUGAAAAGUAACUUGUCAAAUUGAUUUAAAAAUUCAUAAAUCAACUGAAACUUGCUCUGCU
.....(((.(((................(((-------------....(((....))).....)))...((((((((........)))))))).......)))))).... ( -14.00)
>DroEre_CAF1 62221 97 + 1
UAAAUGAGACAAAUAUUUUUCAAUAAGCGAC-------------UCCAACUGAAAAGUAACUUGUCAAAUUGAUUUAAAAAUUCAUAAAUCAACUGAAACUUGCUCUGCU
.....(((.(((.....(((((......(((-------------....(((....))).....)))...((((((((........)))))))).))))).)))))).... ( -14.90)
>DroYak_CAF1 71218 97 + 1
UAAAUGAGACAAAUAUUUUUCAAUAAGUGAC-------------UCCAACUGAAAAGUAACUUGUCAAAUUGAUUUAAAAGUUCAUAAAUCAACCGAAACUUGCUCUGCU
.....(((.(((.....((((......((((-------------....(((....))).....))))..((((((((........))))))))..)))).)))))).... ( -15.00)
>DroAna_CAF1 64583 106 + 1
UAAACGAGACAAAUAUUUUUCAAUAAAGGUCUGCUCCAGUUCAAUCAAACUGAAAAGUAACUUGUCAAAUUGAUUUAAAAAUUCAUAAAUCAACUAAAACUU----CACU
.....(((((((.((((((((......((......))((((......))))))))))))..)))))...((((((((........))))))))........)----)... ( -18.00)
>consensus
UAAAUGAGACAAAUAUUUUUCAAUAAACGAC_____________UCCAACUGAAAAGUAACUUGUCAAAUUGAUUUAAAAAUUCAUAAAUCAACUGAAACUUGCUCUGCU
.......(((((.(((((((((............................)))))))))..)))))...((((((((........))))))))................. (-13.56 = -13.42 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:17 2006