Locus 6802

Sequence ID 3L_DroMel_CAF1
Location 18,279,549 – 18,279,648
Length 99
Max. P 0.761500
window11047

overview

Window 7

Location 18,279,549 – 18,279,648
Length 99
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 95.68
Mean single sequence MFE -20.00
Consensus MFE -18.72
Energy contribution -19.12
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.21
Structure conservation index 0.94
SVM decision value 0.50
SVM RNA-class probability 0.761500
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18279549 99 - 23771897
GCUCGAUUCGCUGUUUUUGUCAAGCGUGCAAAAAUGUCAGCAAGUAAAAGGCAAAACCAGAGACCCAAAAACAGAAAACAGCACACUGAAAGCUGAAA-------G
..........(((((((((((..((..(((....)))..))........((.....))...)))..))))))))....((((.........))))...-------. ( -17.80)
>DroSec_CAF1 63561 99 - 1
GCUCGGUUCGCUGUUUUUGUCAAGCGUGCAAAAAUGUCAGCAAGUAAAAGGCAAAACCAGAGACCCAAAAACAGAAAACAGCACACUGAAAACUGAAA-------G
..(((((..((((((((((((..((..(((....)))..))........((.....))...))).........)))))))))..))))).........-------. ( -20.10)
>DroSim_CAF1 71228 99 - 1
GCUCGGUUCGCUGUUUUUGUCAAGCGUGCAAAAAUGUCAGCAAGUAAAAGGCAAAACCAGAGACCCAAAAACAGAAAACAGCACACUGAAAACUGAAA-------G
..(((((..((((((((((((..((..(((....)))..))........((.....))...))).........)))))))))..))))).........-------. ( -20.10)
>DroEre_CAF1 60845 106 - 1
GCUCGGUUCGCUGUUUUUGUCAAGCGUGCAAAAAUGUCAGCAAGUAAAGGGCAAAACGAGAGACCCAAAAACAGAAAACAGCACACUGAAAACUGAAAGCUGAAAG
..(((((..(((((((((.....((..(((....)))..)).......((((.........).))).......)))))))))..)))))................. ( -21.90)
>DroYak_CAF1 69729 99 - 1
GCUCGGUUCGCUGUUUUUGUCAAGCGUGCAAAAAUGUCAGCAAGUAAAAGGCAAAACCAGAGACCCAAAAACAGAAAACAGCACACUGAAAACUGAAA-------G
..(((((..((((((((((((..((..(((....)))..))........((.....))...))).........)))))))))..))))).........-------. ( -20.10)
>consensus
GCUCGGUUCGCUGUUUUUGUCAAGCGUGCAAAAAUGUCAGCAAGUAAAAGGCAAAACCAGAGACCCAAAAACAGAAAACAGCACACUGAAAACUGAAA_______G
....((.((.(((.(((((((..((.(((..........))).))....))))))).))).)).)).....(((....(((....)))....)))........... (-18.72 = -19.12 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:16 2006