Locus 6800

Sequence ID 3L_DroMel_CAF1
Location 18,277,705 – 18,277,799
Length 94
Max. P 0.526940
window11044

overview

Window 4

Location 18,277,705 – 18,277,799
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 78.83
Mean single sequence MFE -13.44
Consensus MFE -7.52
Energy contribution -7.32
Covariance contribution -0.20
Combinations/Pair 1.33
Mean z-score -1.76
Structure conservation index 0.56
SVM decision value -0.01
SVM RNA-class probability 0.526940
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18277705 94 - 23771897
UCAAUUAAAAUUCAUGACUAGUUUACCCUAUUCGCAUUUAACUGUCACUCUUUCCUUAGAGUCUUAGUAAACGCUUUUGAACUUUUUACGUGUU
.((..(((((((((.((.(((......))).))((.((((.(((..(((((......)))))..))))))).))...))))..)))))..)).. ( -14.20)
>DroSec_CAF1 61763 94 - 1
UCAAUUUUAAUUCAUGACUCUUUUAUCCUAUUCGCAUUUCACUGUCACUCUUUCUCUGGAGUCUUAGUAAACGCCUUUGAACUUUUUCCGUGUU
............((((.................((.(((.((((..(((((......)))))..))))))).))....(((....))))))).. ( -11.60)
>DroSim_CAF1 69442 94 - 1
UCAAUUAAAAUUCAUGACUAGUUCAGCCUAUUCGCAUUUUACUGUCACUCUUUCUCUGGAGUCUUAGUAAACGCCUUUGAACUUUUUCUGUGUU
............(((((..((((((((......))..(((((((..(((((......)))))..)))))))......))))))...)).))).. ( -18.70)
>DroEre_CAF1 59013 80 - 1
UAAAAUCAAUUUGGUGCCUAGUUCACCCCUUUCGCAUUUAAUUGUCACUCUUUU-CUGGAGCC-------------UUGAACUUUUUCCAUUUU
...........(((.....((((((........(((......)))..((((...-..))))..-------------.))))))....))).... ( -11.70)
>DroYak_CAF1 67911 94 - 1
UCAAAUCUAUUUCAUGUCUUGUUCACCCCAUUCGCAUUUAAUUGUCACUCUUUCACUGGAGUCUUGGUAAACGCUCUUGAACUUUUUCCAUUUU
..........((((.(...((((.(((......(((......))).(((((......)))))...))).))))..).))))............. ( -11.00)
>consensus
UCAAUUAAAAUUCAUGACUAGUUCACCCUAUUCGCAUUUAACUGUCACUCUUUCUCUGGAGUCUUAGUAAACGCCUUUGAACUUUUUCCGUGUU
............((((...((((((........(((......))).(((((......)))))...............)))))).....)))).. ( -7.52 =  -7.32 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:13 2006