Locus 68

Sequence ID 3L_DroMel_CAF1
Location 275,314 – 275,404
Length 90
Max. P 0.592714
window96

overview

Window 6

Location 275,314 – 275,404
Length 90
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 83.72
Mean single sequence MFE -27.23
Consensus MFE -15.82
Energy contribution -16.66
Covariance contribution 0.84
Combinations/Pair 1.19
Mean z-score -2.11
Structure conservation index 0.58
SVM decision value 0.12
SVM RNA-class probability 0.592714
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 275314 90 + 23771897
CCGAGGGGCAAAAUGAGCGAAGUGCAGCUGACGAGU---AUUGACAUAGAUGGUAGAGGCCAUACGGAAGUUGUGCAAAAUAAACAGCCUCCU
..((((.((.......))...(..(((((..((.((---....))....(((((....))))).))..)))))..)...........)))).. ( -24.60)
>DroSec_CAF1 47726 88 + 1
CCGGGGGGCAAAAGCAGCGAAGUGCAGCUGACGAGC---AUUGACAUAGAUGGUCUCUA--CUACGGAAGUUGUGCAAAAUAUAGAGCCUCCU
..(((((((....(((((........)))).)((.(---(((......)))).))..((--(.((....)).)))...........))))))) ( -26.90)
>DroSim_CAF1 43267 87 + 1
CCGG-GGGCAAAAGCAGCGAAGUGCAGCUGACGAGC---AUUGACAUAGAUGGCCUCUA--CUACGGAAGUUGGGCAAAAUAUAGAGCCUCUU
..((-((((....(((((........)))).)...(---(((......))))((((...--..((....)).))))..........)))))). ( -23.90)
>DroEre_CAF1 47459 91 + 1
CCGGGAGGCAAAAGAAGUCAAAUACAGCUGACGAGCUGUAUUGACAUAGAUGGCCUCUA--CUACGGAAGUUGUGCAAAAUGUAUAGCCUCGU
(((((((((.......(((((.(((((((....)))))))))))).......)))))).--...)))..(((((((.....)))))))..... ( -33.64)
>DroYak_CAF1 43815 91 + 1
CCGAGAGGCAAAAGGAGUCAAAUACAGCUGACGAGCAGUAUUGACAUAGAUGGCCACUA--CUACGGAAGUUGUGCGAAAUAUAUAGCCUCUU
..(((((((.......(((((.(((.(((....))).))))))))(((.((..((((..--..((....)).))).)..)).))).))))))) ( -27.10)
>consensus
CCGGGGGGCAAAAGCAGCGAAGUGCAGCUGACGAGC___AUUGACAUAGAUGGCCUCUA__CUACGGAAGUUGUGCAAAAUAUAGAGCCUCCU
..(((((((............((((((((..((((.........((....)).........)).))..))))))))..........))))))) (-15.82 = -16.66 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:30 2006