Locus 6799

Sequence ID 3L_DroMel_CAF1
Location 18,276,420 – 18,276,520
Length 100
Max. P 0.704416
window11043

overview

Window 3

Location 18,276,420 – 18,276,520
Length 100
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 89.38
Mean single sequence MFE -25.48
Consensus MFE -20.77
Energy contribution -21.27
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.19
Structure conservation index 0.82
SVM decision value 0.36
SVM RNA-class probability 0.704416
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18276420 100 + 23771897
GACAUACCCACACUGCCCUAGCCCGCUGCCAU-AACCCAUAAUAACCCCUUCUUUAAGAUGGCAAAACGCCCUUAAUCAGCACAGCGGGCAGU-UGGCAUCG
.............((((((.((((((((....-...((((..(((........)))..))))......((.........)).)))))))))).-.))))... ( -25.20)
>DroPse_CAF1 70952 97 + 1
GACUGUCC----CUGCCCCGUCCCCGUCCCCGACCCUCCUGCUAACC-CUUCUUUAAGAUGGCAAAACGCCCUUAAUCAGCACAGCGGGCAGUUUGGCAUAA
...((((.----((((((.(((.........)))......(((....-((...(((((..(((.....))))))))..))...)))))))))...))))... ( -22.40)
>DroSec_CAF1 60470 100 + 1
GACAUGCCCACACUGCCCUAGCCCGCUGCCAU-AACCCAUAAUAACCCCUUCUUUAAGACGGCAAAACGCCCUUAAUCAGCACAGCGGGCAGU-UGGCAUCG
...(((((...(((((((..((..((((....-....................(((((..(((.....)))))))).))))...)))))))))-.))))).. ( -27.21)
>DroSim_CAF1 67685 100 + 1
GACAUACCCACACUGCCCUAGCCCGCUGCCAU-AACCCAUAAUAACCCCUUCUUUAAGAUGGCAAAACGCCCUUAAUCAGCACAGCGGGCAGU-UGGCAUCG
.............((((((.((((((((....-...((((..(((........)))..))))......((.........)).)))))))))).-.))))... ( -25.20)
>DroEre_CAF1 57837 99 + 1
GACAUGCCCACACUGCCCUAACCCGUUGCCAU-AACCCAUAAUAACC-CUUCUUUAAGAUGGCAAAACGCCCUUAAUCAGCACAGCGGGCAGU-UGGCAUCG
...(((((...(((((((.......(((((((-..............-..........)))))))...((.........)).....)))))))-.))))).. ( -26.26)
>DroYak_CAF1 65967 99 + 1
GACAUACCCACACUGCCCUAGCCCGUUGGCAU-AACCCAUAAUAACC-CUUCUUUAAGAUGGCAAAACGCCCUUAAUCAGCACAGCGGGCAGU-UGGCAUCG
.............((((((.((((((((((..-..............-(((....)))..(((.....)))........)).)))))))))).-.))))... ( -26.60)
>consensus
GACAUACCCACACUGCCCUAGCCCGCUGCCAU_AACCCAUAAUAACC_CUUCUUUAAGAUGGCAAAACGCCCUUAAUCAGCACAGCGGGCAGU_UGGCAUCG
.......(((.(((((((...................................(((((..(((.....))))))))...((...))))))))).)))..... (-20.77 = -21.27 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:13 2006