Locus 6798

Sequence ID	3L_DroMel_CAF1
Location	18,274,102 – 18,274,193
Length	91
Max. P	0.500000

overview

Window 2

Location	18,274,102 – 18,274,193
Length	91
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	95.40
Mean single sequence MFE	-30.40
Consensus MFE	-26.90
Energy contribution	-28.14
Covariance contribution	1.24
Combinations/Pair	1.03
Mean z-score	-1.17
Structure conservation index	0.88
SVM decision value	-0.06
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18274102 91 - 23771897
-CCUGGUCCCUUAACCCCAUCGCCGGUUAGGGGGUCGAAAGGAGCCAGUCUCGUCCCGGACUUUUCAAUAUGCAGAUCCGCGUGUUUCUUUU
-...(..(((((((((........)))))))))..)(((((((((.(((((......))))).......((((......))))))))))))) ( -31.30)
>DroSec_CAF1 58190 91 - 1
-CCCGGUCCCUUAACCCCAUCGCGGGGUAGGGGGUCGAAAGGAGCCAGUCUCGUCCAGGACUUUUCAAUAUGCAGAUCCGCGUGUUUCUUUU
-..((..((((((.((((.....))))))))))..))((((((((.(((((......))))).......((((......)))))))))))). ( -34.90)
>DroSim_CAF1 65389 91 - 1
-CCCGGUCCCUUAACCCCAUCGCGGGGUAGGGGGUCGAAAGGAGCCAGUCUCGUCCAGGACUUUUCAAUAUGCAGAUCCGCGUGUUUCUUUU
-..((..((((((.((((.....))))))))))..))((((((((.(((((......))))).......((((......)))))))))))). ( -34.90)
>DroEre_CAF1 55549 92 - 1
CCCCGGUCCCUUAACCCCAUCGCGGUGAAGGGGGUCGAAAGCAGCCAGUCUCGUCCAGGACUUUUCAAUAUGCAGAUCCGCGUGUUUCUUUU
...((..(((((.(((.......)))..)))))..)).........(((((......)))))....(((((((......)))))))...... ( -24.20)
>DroYak_CAF1 63592 91 - 1
-CCCGGUCCCUUAACCCCAUCGCGGUGUCGGGGGUCGAAAGGAGCCAGUCUCGGCCAGGACUUUUCAAUAUGCAGAUCCGCGUGUUUCUUUU
-..((..((((..(((.......)))...))))..))((((((((.(((((......))))).......((((......)))))))))))). ( -26.70)
>consensus
_CCCGGUCCCUUAACCCCAUCGCGGGGUAGGGGGUCGAAAGGAGCCAGUCUCGUCCAGGACUUUUCAAUAUGCAGAUCCGCGUGUUUCUUUU
...((..((((((.((((.....))))))))))..))((((((((.(((((......))))).......((((......)))))))))))). (-26.90 = -28.14 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:12 2006