| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,272,410 – 18,272,503 |
| Length | 93 |
| Max. P | 0.651394 |
| Location | 18,272,410 – 18,272,503 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 81.95 |
| Mean single sequence MFE | -23.39 |
| Consensus MFE | -16.14 |
| Energy contribution | -16.87 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18272410 93 + 23771897 AGAGAAACGGAACGGAAAUGGUAACAAUG--C-CGAGCUGCCAGUUCUGUUCUGUAAACAAUUGACUGUGAACUCAGAAAAAACCA----AAGCUUGUUC .(((..(((((((((((.(((((.(....--.-...).))))).)))))))))))..(((......)))...)))...........----.......... ( -23.80) >DroSec_CAF1 56578 89 + 1 -GAGAAACGGAACGGAAGUGGUAACAAUG--C-UGAGCUGCCAGUUCUGUUCUGUAAACAAUUGAAUGUGCACUCAAAAAAAAUCA----AAGUGUG--- -(((..(((((((((((.(((((.(....--.-...).))))).)))))))))))..(((......)))...)))...........----.......--- ( -25.50) >DroSim_CAF1 62629 92 + 1 -GAGAAACGGAACGGAAAUGGUAACAAUG--C-CGAGCUGCCAGUUCUGUUCUGUAAACAAUUGAAUGUGCACUGAAAAAAAAUCA----AAGUGUUUUC -.....(((((((((((.(((((.(....--.-...).))))).)))))))))))........(((...(((((............----.))))).))) ( -24.62) >DroEre_CAF1 53701 92 + 1 -GAGAAACGGAACGGAAAUGGUAACAAUG--C-CGAGCUGCCAGUUCUGCUCUGCAAACAAUUGCCCGUGCACUCAAAGAAAUCAA----AAGUGGGUCU -(((..((((..(((((.(((((.(....--.-...).))))).)))))....((((....))))))))...)))...........----.......... ( -20.60) >DroYak_CAF1 61920 94 + 1 -GAGAAACGGAACGGAAAUGGUAACAAUGCGC-CGAGUUGCCAGUGCUGUUCUGUAAACAAUUGACCGUGCACUCAAAGAAAUCUU----AAGUGUGUUC -.....(((((((((...(((((((.......-...)))))))...)))))))))............(..((((..(((....)))----.))))..).. ( -27.40) >DroAna_CAF1 56459 98 + 1 AGAGAACUGGAACGGAAACGGCAACAAUG--CCUGAGCUGCGAGUUCUGUUCUGUAAACAAUUGACCAUGCACUUGAAGAAAAAUAUGUUAACCUUGCUG ..(((((.((((((....)((((....))--))..........)))))))))).....(((.((......)).)))........................ ( -18.40) >consensus _GAGAAACGGAACGGAAAUGGUAACAAUG__C_CGAGCUGCCAGUUCUGUUCUGUAAACAAUUGACCGUGCACUCAAAAAAAACCA____AAGUGUGUUC ......(((((((((((.(((((.(...........).))))).)))))))))))............................................. (-16.14 = -16.87 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:11 2006