| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,271,170 – 18,271,264 |
| Length | 94 |
| Max. P | 0.794952 |
| Location | 18,271,170 – 18,271,264 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 89.45 |
| Mean single sequence MFE | -28.86 |
| Consensus MFE | -26.74 |
| Energy contribution | -26.72 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18271170 94 + 23771897 -AGUCCGCCACUUGUGGGUGAUGUUCCACAAGUCUCCUACCGGCAAAAGCUUUUUAUUUCUCACCCAACUGGCUUCAAGGUCGUGCCGGCCGGCA -.....((((((((((((......)))))))))......((((((.(((((...................)))))........))))))..))). ( -29.91) >DroSec_CAF1 55338 94 + 1 -AGUCCGCCACUUGUGGGUGAUGUUUCACAAGUCUCCUACCGGCAAAAGCUUUUUAUUUCUCACCCAACUGGCUUCAAGGUCGUGCCGGCCGGCA -.....((((((((((((......)))))))))......((((((.(((((...................)))))........))))))..))). ( -27.11) >DroSim_CAF1 61344 94 + 1 -AGUCCGCCACUUGUGGGUGAUGUUCCACAAGUCUCCUACCGGCAAAAGCUUUUUAUUUCUCACCCAACUGGCUUCAAGGUCGUGCCGGCCGGCA -.....((((((((((((......)))))))))......((((((.(((((...................)))))........))))))..))). ( -29.91) >DroEre_CAF1 52622 95 + 1 GCGUCCGCCACUUGUGGGCGAUGUUCCACAAGUCUCCUACCGGCAAAAGCUUUUUAUUUCCCACCCAACUGGCUUCAAGGUCGUGCCGGCCGGCA ......((((((((((((......)))))))))......((((((...(((((.......(((......)))....)))))..))))))..))). ( -31.50) >DroYak_CAF1 60812 95 + 1 GAGUCCGCCACUUGUGGGUGAUGUUCCACAAGUCUCCUACCGGCAAAAGCUUUUUACUUCCAACUCAACUGGCUUCAAGGUCGUGCCGGCCGGCA ......((((((((((((......)))))))))......((((((...(((((......(((.......)))....)))))..))))))..))). ( -32.80) >DroAna_CAF1 55317 92 + 1 AGAGCUGCCAUUUGUGAGUGCUCCUCCGCAGGACUCCUACCGGCAAAAGCUUUUU---CCUCACUCAAUUUGCUUCAAGGUCACGCCGGCCGGCA ......(((.....((((((.((((....))))........(((....)))....---...))))))...........((((.....))))))). ( -21.90) >consensus _AGUCCGCCACUUGUGGGUGAUGUUCCACAAGUCUCCUACCGGCAAAAGCUUUUUAUUUCUCACCCAACUGGCUUCAAGGUCGUGCCGGCCGGCA ......((((((((((((......)))))))))......((((((...(((((.......................)))))..))))))..))). (-26.74 = -26.72 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:10 2006