Locus 6795

Sequence ID 3L_DroMel_CAF1
Location 18,266,408 – 18,266,503
Length 95
Max. P 0.869343
window11039

overview

Window 9

Location 18,266,408 – 18,266,503
Length 95
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 90.19
Mean single sequence MFE -22.06
Consensus MFE -18.88
Energy contribution -18.04
Covariance contribution -0.84
Combinations/Pair 1.24
Mean z-score -1.58
Structure conservation index 0.86
SVM decision value 0.86
SVM RNA-class probability 0.869343
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18266408 95 - 23771897
UAUUAUUCCUUAAGGGAAGCAAAAUUCCAAAGCAUUUACUUAGGCAUGAGCUAGAUACCUUAGUGGUGUCAUA---CCGCAAAGCUCGACCAGGAUAU
......((((....((((......))))..............((..((((((.((((((.....))))))...---......)))))).))))))... ( -21.60)
>DroSec_CAF1 50623 98 - 1
UAUUAUUCCUUAAAGGAAGCAAAAUUCCAAAGCAUUUACCUAGGCAUGAGCUAGAUACCUCAGUGGUGUCAUAAGACAGCAGAGCUCGACCAGGAUAU
..............((((......))))..........(((.((..((((((.((((((.....))))))....(....)..)))))).))))).... ( -23.50)
>DroSim_CAF1 56614 98 - 1
UAUUAUUCCUUAAAGGAAGCAAAAUUCCAAAGCAUUUACCUAGGCAUGAGCUAGAUACCUCAGUGGUGUCAUAAGACAGCAGAGCUCGACCAGGAUAU
..............((((......))))..........(((.((..((((((.((((((.....))))))....(....)..)))))).))))).... ( -23.50)
>DroEre_CAF1 47928 97 - 1
UACU-UUCCUAAAAGGAAGCAAAAUUCCAAAGCAUUUACUUAAGUAUGAGCCAGAUACCCCAGUGGUGUCACAAGACAGCAGAGCUCGACUAAGAUAU
....-.........((((......))))..........((((.((.((((((.((((((.....))))))....(....).).))))))))))).... ( -19.20)
>DroYak_CAF1 55977 97 - 1
UAUU-UUCCUAAGAGGAAGCAAAAUUCCAAAGCAUUUACUUAGGUAUGAGCCAGAUACCUCAGUGGUGUCAUAAGACAGCAAAGCUCAACUAAGAUAU
....-.........((((......))))..........(((((...(((((..((((((.....))))))....(....)...))))).))))).... ( -22.50)
>consensus
UAUUAUUCCUUAAAGGAAGCAAAAUUCCAAAGCAUUUACUUAGGCAUGAGCUAGAUACCUCAGUGGUGUCAUAAGACAGCAGAGCUCGACCAGGAUAU
..............((((......))))..........(((.((..(((((..((((((.....))))))....(....)...))))).))))).... (-18.88 = -18.04 +  -0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:09 2006