| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,251,312 – 18,251,406 |
| Length | 94 |
| Max. P | 0.837791 |
| Location | 18,251,312 – 18,251,406 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 89.26 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -14.04 |
| Energy contribution | -14.08 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18251312 94 + 23771897 GAACCAAAAAUAACGCCGAAAACCGCAAAAAGUGCGCAUCGGGCGAUAAAUUCAUUGGAAUUCAUUGCAAAGCGCAGAACCAAAAAUCGUAACC ............(((((((....((((.....))))..))))(((((.(((((....))))).)))))...................))).... ( -17.80) >DroSec_CAF1 33943 94 + 1 GAACCAAAAAUAACGCCGAAAACCGCAAAAAGUGCGCAUCGGGCGAUAAAUUCAUUCGAAUUCAUUGCAAAGCGCAGAACCGAAAAUCGUAACC ............(((((((....((((.....))))..))))(((((.(((((....))))).)))))...................))).... ( -17.90) >DroSim_CAF1 39914 94 + 1 GAACCAAAAAUAACGCCGAAAACCGCAAAAAGUGCGCAUCGGGCGAUAAAUUCAUUCGAAUUCAUCGCAAAGCGCAGAACCGAAAAUCGUAACC ............(((((((....((((.....))))..))))(((((.(((((....))))).)))))...................))).... ( -20.00) >DroEre_CAF1 33737 94 + 1 GAACCAAAAAUAACGCCGAAAACCGCAAAAAGAGUCCAUCGAGCGAUAAAUUCAUUCGAAUUUAUGGCGAAGCGAAAUUACGAAGAACGUAACC .............((((......(((.....((.....))..)))((((((((....))))))))))))........(((((.....))))).. ( -18.00) >DroYak_CAF1 41310 94 + 1 GAACCAAAAAUAAUGCCGAAAACCGCAAAAAGAGCUCAUCGGGCAAUAAAUUCAUUCGAAUUCAUUGCGAAGCGAAACUACAAAAAACUUAACC ...............((((.....((.......))...))))(((((.(((((....))))).))))).......................... ( -13.30) >consensus GAACCAAAAAUAACGCCGAAAACCGCAAAAAGUGCGCAUCGGGCGAUAAAUUCAUUCGAAUUCAUUGCAAAGCGCAGAACCGAAAAUCGUAACC .............((((((....(((.......)))..))).(((((.(((((....))))).)))))...))).................... (-14.04 = -14.08 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:06 2006