Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,239,187 – 18,239,307 |
Length | 120 |
Max. P | 0.967087 |
Location | 18,239,187 – 18,239,307 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.12 |
Mean single sequence MFE | -25.64 |
Consensus MFE | -18.14 |
Energy contribution | -18.78 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.15 |
Mean z-score | -2.29 |
Structure conservation index | 0.71 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18239187 120 + 23771897 UUACUUUUCUGUCCUUUUUCGAUUUAAUACCCCUCAAUCGAUGAGCUUAUUCCACUCUUUGAUAACUUUUACAGCAAUUGGUAUACAGCUUAGACUCUAAGCUGAACGGAAUAACUCAUC .......................................((((((.((((((((((..(((.............)))..)))...((((((((...))))))))...))))))))))))) ( -26.92) >DroSec_CAF1 21898 120 + 1 UUACUCUUCUGUUCUGUUUGGAUUUAAAACCCCUCAAUCGAUGAGCUUAAUCCACUCUUUGAUAACUUUUACAGCAAUUGGUCUAGGGUUUAGACUCUAAGCUGAACGGAAUAACUCAUC ......((((((((.(((((((((((((..((((..((((((..((((((..................))).))).))))))..)))))))))).))))))).))))))))......... ( -30.97) >DroSim_CAF1 27838 120 + 1 UUACUCUUCUGUCCCUUUUGGAUUUAAGACCCCUCAAUCGAUGAGCUUAAUCCACUCUUUGAUAACUUUUACAGCAAUUGGUCCAGGGCUUAGACUCUAAGCUGAACGGAAUAACUCAUC ....((((..((((.....))))..))))..........((((((.(((.((((((..(((.............)))..)))....(((((((...)))))))....))).))))))))) ( -25.72) >DroEre_CAF1 22018 106 + 1 -------------CCUUGUCGAUUUAAUGCC-CCCAAUCGGAGAGCUUAUUCCACUCUUUGAUAACUCAUACAGCAAAUGUUCUAGGGCUUAGACUCUAAGCUGAACGGAGUAACUCAUC -------------.....((((((.......-...)))))).(((.(((((((......(((....)))..........((((...(((((((...)))))))))))))))))))))... ( -23.70) >DroYak_CAF1 28803 102 + 1 ------------------UGAAUUGAAUACCACUCUAACGAAGAGCUUAUUCCACUAUUUGAUAGCUCAUACAGCAAAUGGUCGAAGGCUUAGACUCCAAGCUGAACGGAAUAACUCAUC ------------------...............((....)).(((.(((((((......(((....)))..((((....((((.........))))....))))...))))))))))... ( -20.90) >consensus UUACU_UUCUGU_CCUUUUGGAUUUAAUACCCCUCAAUCGAUGAGCUUAUUCCACUCUUUGAUAACUUUUACAGCAAUUGGUCUAGGGCUUAGACUCUAAGCUGAACGGAAUAACUCAUC .......................................((((((.((((((((((..(((.............)))..)))....(((((((...)))))))....))))))))))))) (-18.14 = -18.78 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:02 2006