| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,233,853 – 18,233,943 |
| Length | 90 |
| Max. P | 0.951579 |
| Location | 18,233,853 – 18,233,943 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.27 |
| Mean single sequence MFE | -33.95 |
| Consensus MFE | -18.65 |
| Energy contribution | -19.18 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.09 |
| Mean z-score | -3.08 |
| Structure conservation index | 0.55 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.951579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18233853 90 + 23771897 -CUUGAGUGAAAGUUGAUGUGCAUGAAAAGUUUGAAUUGCGCGUCGAGUUU------UGCUCGGCAUC-----UCUGGGUGGCAGG-GUCGCACUUUAAUUUU-------- -..((((..(((.((((((((((..............)))))))))).)))------..))))((..(-----((((.....))))-)..))...........-------- ( -32.74) >DroVir_CAF1 39135 96 + 1 -CUUGAGUGAAAGUUGAUGUGCAUGAAAAGUUUUAAUUGCGCGUCGAGUUGGAGUUUUUAGUGGCAGCCAGGAACUGGGUGGCACUCACCGCACUGC-------------- -....((((.((.((((((((((..............)))))))))).))((.(.....((((.((.((((...)))).)).))))).)).))))..-------------- ( -30.54) >DroPse_CAF1 21659 95 + 1 GCUCGAGUGAAAGUUGAUGUGCAUGAAAAGUUUUAAUUGCGCGUCGAGUUUGU----GGCCCUGCAAC-----ACUGGGUGGCAGG-GUCGCACUUUAUUUUCCC------ ....((((.(((.((((((((((..............)))))))))).)))((----((((((((.((-----.....)).)))))-))))))))).........------ ( -36.44) >DroYak_CAF1 23292 90 + 1 -CUUGAGUGAAAGUUGAUGUGCAUGAAAAGUUUUAAUUGCGCGUCGAGUUU------UGCUCGGCAUC-----UCUGGGUGGUAGG-GUCGCACUUUAUUUUU-------- -..((((..(((.((((((((((..............)))))))))).)))------..))))((..(-----((((.....))))-)..))...........-------- ( -30.54) >DroAna_CAF1 21359 89 + 1 -CUUGAGUGAAAGUUGAUGUGCAUGAAUAGUUUUAAUUGCGCGUCGAGUUU------GGCCCUGCAUC-----UCUGGGUGGCAGG-GUCGCACUUUG-UUUU-------- -...((((((((.((((((((((((((....))))..)))))))))).)))------(((((((((((-----....))).)))))-))).)))))..-....-------- ( -36.50) >DroPer_CAF1 21185 101 + 1 GCUCGAGUGAAAGUUGAUGUGCAUGAAAAGUUUUAAUUGCGCGUCGAGUUUGU----GGCCCUGCAAC-----ACUGGGUGGCAGG-GUCGCACUUUAUUUUCCCCCCUCC ....(((.((((.((((((((((..............)))))))))).)))((----((((((((.((-----.....)).)))))-)))))..............)))). ( -36.94) >consensus _CUUGAGUGAAAGUUGAUGUGCAUGAAAAGUUUUAAUUGCGCGUCGAGUUU______GGCCCGGCAUC_____ACUGGGUGGCAGG_GUCGCACUUUAUUUUU________ ....((((((((.((((((((((..............)))))))))).))).......((((..............))))...........)))))............... (-18.65 = -19.18 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:57 2006