Locus 6787

Sequence ID 3L_DroMel_CAF1
Location 18,232,633 – 18,232,724
Length 91
Max. P 0.579108
window11026

overview

Window 6

Location 18,232,633 – 18,232,724
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 91.70
Mean single sequence MFE -26.68
Consensus MFE -22.60
Energy contribution -23.22
Covariance contribution 0.61
Combinations/Pair 1.15
Mean z-score -1.61
Structure conservation index 0.85
SVM decision value 0.09
SVM RNA-class probability 0.579108
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18232633 91 + 23771897
UUUUUUUAGUUUUUGUUCGCGUUGUCGCUGCACGUGUUCAACGUCAUCAGCAUUAGCGGGUCUGUUGUAUUAGGCGAGAACAGAAAAGCCA
.........(((((((((.(((((..((((.((((.....))))...))))..))))).(((((......)))))..)))))))))..... ( -27.10)
>DroVir_CAF1 37378 90 + 1
-UGUUUUUGUUGCUCUGUUUGUUGUCGCUGCACGUGUUCAUCGUCAUCAGCAUUAGCGGCGCUGUUGUAUUAGGCGAGAACAGACAAACAA
-.....(((((....((((((((.(((((((..(((((.((....)).)))))..)))))(((.........))))).))))))))))))) ( -24.90)
>DroSec_CAF1 15255 90 + 1
-UUUUUUAGUUUUUGUUCGCGUUGUCGCUGCACGUGUUCAACGUCAUCAGCAUUAGCGGGUCUGUUGUAUUAGGCGAGAACAGAAGAGCCA
-........(((((((((.(((((..((((.((((.....))))...))))..))))).(((((......)))))..)))))))))..... ( -26.80)
>DroSim_CAF1 21226 91 + 1
UUUUUUUAGUUUUUGUUCGCGUUGUCGCUGCACGUGUUCAACGUCAUCAGCAUUAGCGGGUCUGUUGUAUUAGGCGAGAACAGAAAAGCCA
.........(((((((((.(((((..((((.((((.....))))...))))..))))).(((((......)))))..)))))))))..... ( -27.10)
>DroEre_CAF1 15512 87 + 1
----UUUAGUUUUUGUUCGCGUUGUCGCUGCACGUGUUCAACGUCAUCAGCAUUAGCGGGUCUGUUGUAUUAGGCGAGAACAGAAAGGCCG
----.....(((((((((.(((((..((((.((((.....))))...))))..))))).(((((......)))))..)))))))))..... ( -27.10)
>DroYak_CAF1 22053 91 + 1
UUUUUUUAGUUUUUGUUCGCGUUGUCGCUGCACGUGUUCAACGUCAUCAGCAUUAGCGGGUCUGUUGUAUUAGGCGAGAACAGAAAAGCCA
.........(((((((((.(((((..((((.((((.....))))...))))..))))).(((((......)))))..)))))))))..... ( -27.10)
>consensus
_UUUUUUAGUUUUUGUUCGCGUUGUCGCUGCACGUGUUCAACGUCAUCAGCAUUAGCGGGUCUGUUGUAUUAGGCGAGAACAGAAAAGCCA
.........(((((((((.(((((..((((.((((.....))))...))))..))))).(((((......)))))..)))))))))..... (-22.60 = -23.22 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:56 2006