| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,228,140 – 18,228,231 |
| Length | 91 |
| Max. P | 0.980812 |
| Location | 18,228,140 – 18,228,231 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 89.78 |
| Mean single sequence MFE | -26.95 |
| Consensus MFE | -23.82 |
| Energy contribution | -23.90 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.980812 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18228140 91 - 23771897 C-AAAAUAAUAAUUCAGCCGCAAGGCAAUCAAAGCAAAUCAGGAUUGCGGUCCAGGAUCUCAGGUUAGGUUUGAGAUCCAGGUCCUUGUC--UG .-..............(((....))).......((((.......))))((.((.((((((((((.....)))))))))).)).)).....--.. ( -30.30) >DroSec_CAF1 10643 91 - 1 C-AAAAUAAUAAUUCAGCCGCAAGGCAAUCAAAGCAAAUCAGGAUUGCGGUCCAGGAUCUCAGGUUAGGUUGGAGAUCCAGCUCCUUGUC--UG .-..............(((....)))......(((......((((....)))).(((((((...........))))))).))).......--.. ( -25.30) >DroSim_CAF1 17009 87 - 1 C-AAAAUAAUAAUUCAGCCGCAAGGCAAUCAAAGCAAAUCAGGAUUGCGGUCCAGGAUCUCAGGUUAGGUUGGAGAUCCAGGUCCUUG------ .-..............(((....))).......((((.......))))((.((.(((((((...........))))))).)).))...------ ( -27.10) >DroEre_CAF1 10443 90 - 1 C-AAAAUAAUAAUUCAGCCGCAAGGCAAUCGAAGCAAAUCAGGAUUGCGGUCCAGGAUCUCAGGCUAGGUUUGGGAUCCAGGUCCUU-UC--UG .-..............(((....)))....(((((((.......))))((.((.(((((((((((...))))))))))).)).)).)-))--.. ( -32.10) >DroYak_CAF1 17378 92 - 1 CCAAAAUAAUAAUUCAGCCGCAAGGCAAUCAAAGCAAAUCAGGAUUGCGGUCCAGGAUCUCAGGUUCGGUUCGAGAUCCAGGUCCUUGUC--UG ................(((....))).......((((.......))))((.((.(((((((.((......))))))))).)).)).....--.. ( -28.10) >DroAna_CAF1 15840 89 - 1 C-CAAAUAAUAAUUCAGCCGCAAGGCAAUCAAAGCAAAUC----UUGUGGUCCAGGAUCUCAGCUUUAUUUCAAAAUUCAGGUCCUUGUCCUUG .-..............(((....)))..............----....((.(.(((((((.((.(((.....))).)).))))))).).))... ( -18.80) >consensus C_AAAAUAAUAAUUCAGCCGCAAGGCAAUCAAAGCAAAUCAGGAUUGCGGUCCAGGAUCUCAGGUUAGGUUCGAGAUCCAGGUCCUUGUC__UG ................(((....))).......((((.......))))((.((.(((((((...........))))))).)).))......... (-23.82 = -23.90 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:55 2006