Locus 6785

Sequence ID 3L_DroMel_CAF1
Location 18,226,123 – 18,226,224
Length 101
Max. P 0.814492
window11024

overview

Window 4

Location 18,226,123 – 18,226,224
Length 101
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 95.11
Mean single sequence MFE -24.85
Consensus MFE -20.83
Energy contribution -21.50
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.84
SVM decision value 0.66
SVM RNA-class probability 0.814492
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18226123 101 + 23771897
---AGACGAAUCCGAAAAAUGACAAACAUAUCUCUGGAUGUAUCUCUUUAUGU-UGUAUCUUUGUAUCUGCUGGAUGCAUCUGAUGCACGUCUCAUUGUCAUUAA
---..............((((((((..(((((....)))))........((((-.(((((..((((((.....))))))...)))))))))....)))))))).. ( -24.60)
>DroSec_CAF1 8676 101 + 1
---AGACGAAUCCGAAAAAUGACAAACAUAUCUCUGGAUGUAUCUCUUUAUGU-UGUAUCUUUGUAUCUGCUGGAUGCAUCUGAUGCACGUCUCAUUGUCAUUAA
---..............((((((((..(((((....)))))........((((-.(((((..((((((.....))))))...)))))))))....)))))))).. ( -24.60)
>DroSim_CAF1 15068 101 + 1
---AGACGAAUCCGAAAAAUGACAAACAUAUCUCUGGAUGUAUCUCUUUAUGU-UGUAUCUUUGUAUCUGCUGGAUGCAUCUGAUGCACGUCUCAUUGUCAUUAA
---..............((((((((..(((((....)))))........((((-.(((((..((((((.....))))))...)))))))))....)))))))).. ( -24.60)
>DroEre_CAF1 8612 101 + 1
---AGACGAAUCCGAAAAAUGACAAACAUAUCUCUGGAUGUAUCUCUUUAUGU-UGUAUCUUUGUAUCUGCUGGAUGCAUCUGAUGCACGUCUCAUUGUCAUUAA
---..............((((((((..(((((....)))))........((((-.(((((..((((((.....))))))...)))))))))....)))))))).. ( -24.60)
>DroYak_CAF1 15439 101 + 1
---AGACGAAUCCGAAAAAUGACAAACAUAUCUCUGGAUGUAUCUCUUUAUGU-UGUAUCUUUGUAUCUGCUGGAUGCAUCUGAUGCACGUCUCAUUGUCAUUAA
---..............((((((((..(((((....)))))........((((-.(((((..((((((.....))))))...)))))))))....)))))))).. ( -24.60)
>DroAna_CAF1 13861 105 + 1
GAGAGACGUAACCGAAAAAUGACAAACAUAUCUGGGUAUGUAUCUCUUUAUGUUUGUAUCUCUGUAUCUGGCGGAUCCAUCUACUGCACGUCUCAUUGUCAUUAA
..(((((((............(((((((((...(((.......)))..)))))))))...(((((.....)))))............)))))))........... ( -26.10)
>consensus
___AGACGAAUCCGAAAAAUGACAAACAUAUCUCUGGAUGUAUCUCUUUAUGU_UGUAUCUUUGUAUCUGCUGGAUGCAUCUGAUGCACGUCUCAUUGUCAUUAA
.................((((((((..(((((....))))).............((((((..((((((.....))))))...)))))).......)))))))).. (-20.83 = -21.50 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:54 2006