Locus 6782

Sequence ID 3L_DroMel_CAF1
Location 18,219,407 – 18,219,505
Length 98
Max. P 0.625635
window11019

overview

Window 9

Location 18,219,407 – 18,219,505
Length 98
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 86.17
Mean single sequence MFE -29.85
Consensus MFE -19.88
Energy contribution -20.77
Covariance contribution 0.89
Combinations/Pair 1.24
Mean z-score -3.49
Structure conservation index 0.67
SVM decision value 0.19
SVM RNA-class probability 0.625635
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18219407 98 - 23771897
UAAAUAGGAGCACUUUGAACAUUGAUCAAAUCAUUGAUCGACAUCAACCCACACAAUUUUCCGA-UUCGCCAUAUGCAAAUCUCUGUGUGGGUCUAAGC
....((((......((((...((((((((....))))))))..))))((((((((.......((-((.((.....)).))))..))))))))))))... ( -24.30)
>DroSec_CAF1 1886 98 - 1
UAAAUAGGAGCACUUUCAACAUUGAUCAAAUCAUUGAUCGACAUCAGCCCACACAGUUUUCCGA-UUCGCCGUAUGCAAAUCGCUGUGUGGGUCUCAGC
.......(((...........((((((((....)))))))).....((((((((((.....(((-((.((.....)).))))))))))))))))))... ( -30.80)
>DroSim_CAF1 8337 98 - 1
UAAAUAGGAGCACUUUCAACAUUGAUCAAAUCAUUGAUCGACAUCAGCCCACACAGUUUUCCGA-UUCGCCGUAUGCAAAUCGCUGUGUGGGUCUAAGC
.........((..........((((((((....)))))))).....((((((((((.....(((-((.((.....)).)))))))))))))))....)) ( -29.60)
>DroEre_CAF1 2046 97 - 1
UAAAUAGGAGCACUUUCAACAUUGAUCAACCCAUUGAUCGACAUCAGCCCACACAGUUUG-CGA-UUCGCUGUAUGCAAAUCGCUGUGUGGGUCUCAGC
.......(((...........((((((((....)))))))).....(((((((((....(-(((-((.((.....)).))))))))))))))))))... ( -33.00)
>DroYak_CAF1 8675 97 - 1
UAUACAGGAGCACUUUCAACAUUGAUCAAAUCAUUGAUCGACAUCAGCCCACACGGUUUGCCGA-UUCGCCGUAUGCAAAUCGCUGUGUGGG-CUGAAC
.....................((((((((....))))))))..(((((((((((((.....(((-((.((.....)).))))))))))))))-)))).. ( -36.20)
>DroAna_CAF1 7611 91 - 1
UAAAUCGAAGCACUUUCAGCAUCGAUCGAAUCAUUGAUCGACCU--------ACAGUUUUUCGGUUUAGUUUUAUGCAAAUCUCUGUGUGGGAUUAAAC
.....(((((.(((...((..((((((((....)))))))).))--------..))).)))))(((((((((((((((......))))))))))))))) ( -25.20)
>consensus
UAAAUAGGAGCACUUUCAACAUUGAUCAAAUCAUUGAUCGACAUCAGCCCACACAGUUUUCCGA_UUCGCCGUAUGCAAAUCGCUGUGUGGGUCUAAGC
.....................((((((((....)))))))).....((((((((((.....(((.((.((.....)))).)))))))))))))...... (-19.88 = -20.77 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:49 2006