Locus 6781

Sequence ID 3L_DroMel_CAF1
Location 18,214,558 – 18,214,657
Length 99
Max. P 0.639563
window11018

overview

Window 8

Location 18,214,558 – 18,214,657
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 92.26
Mean single sequence MFE -29.27
Consensus MFE -27.35
Energy contribution -27.47
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.59
Structure conservation index 0.93
SVM decision value 0.22
SVM RNA-class probability 0.639563
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18214558 99 - 23771897
CGCAGUAUCUCAAACAGCUGACCCAGUCGGUGCAGCAGGUGAUAAGGCGGCAGUGGCAACUUAAACCGCAACUAAAGUCGUCAUAAACCAGCUGCGACU
((((((..........(((((((.....))).)))).(((..((.(((((((((.((..........)).)))...)))))).)).))).))))))... ( -31.80)
>DroSec_CAF1 116018 99 - 1
CCCCGUAUCCCAAACAGCUGACCCACUCGGUGCAGCAGGUGAUAAGGCGGCAGUGGCAACUUAAACCGCAACUAAAGUCGUCAUAAACCAGCUGCGACU
................(((((.....)))))(((((.(((..((.(((((((((.((..........)).)))...)))))).)).))).))))).... ( -26.60)
>DroEre_CAF1 118209 98 - 1
CAUAGUAUCUCAAACAGCUGAC-CAGUCGGUGCAGCAGGUGAGAAGGCGGCAGUGGCAACUUAAACCGCAACAAAAGCCGUCAUAAACCAGCUGCGCAU
....((..........(((((.-...)))))(((((.(((.....((((((.((((.........)))).......))))))....))).))))))).. ( -29.40)
>consensus
CACAGUAUCUCAAACAGCUGACCCAGUCGGUGCAGCAGGUGAUAAGGCGGCAGUGGCAACUUAAACCGCAACUAAAGUCGUCAUAAACCAGCUGCGACU
................(((((.....)))))(((((.(((.....(((((((((.((..........)).)))...))))))....))).))))).... (-27.35 = -27.47 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:48 2006