Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,013,476 – 2,013,574 |
Length | 98 |
Max. P | 0.783431 |
Location | 2,013,476 – 2,013,574 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 82.12 |
Mean single sequence MFE | -34.49 |
Consensus MFE | -23.23 |
Energy contribution | -24.40 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.12 |
Mean z-score | -2.24 |
Structure conservation index | 0.67 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2013476 98 + 23771897 GGGCGAAAAGCCAGAGUUGGUCUGAAUUCCUGACUAGCAAAUGUCUGGCUAUCGGCCAU-------UGGCCAACGGACAGCACAA--CAAUGGCUGACCAG---CGUCAG .((((...((((((((((((((.........))))))).....))))))).((((((((-------((.................--))))))))))....---)))).. ( -37.03) >DroSim_CAF1 79099 98 + 1 GGGCGAAGAGCCAGAGUUGGUCUGAAUUCCUGACUAGCAAAUGUCUGGCUAUCGGCCAU-------UGGCCACCGGACAGCACAA--CAAUGGCUGACCAG---CGUCAG .((((...((((((((((((((.........))))))).....))))))).((((((((-------((.................--))))))))))....---)))).. ( -37.13) >DroEre_CAF1 70169 98 + 1 GGGCGAAAAGCCACAGUUGGUCUGAAUUCCUGACUAGCAAAUGUCUGGCUAUCGGCCAU-------UGGCCACCGGACAGCACAA--CAAUGGCUGACCAG---CGUCAG .((((...(((((..(((((((.........)))))))...(((((((.....((((..-------.)))).)))))))......--...)))))......---)))).. ( -35.00) >DroWil_CAF1 96867 87 + 1 GGCAGAGAAGCCA--GUCGGGCUGAAUUCCUGACUAGCAAAUGUCUG---------------------GCCACUGGACAGCACAACACAAUGGCUGACCAGUAGUGUCAG (((......)))(--((((((.......))))))).........(((---------------------((((((((.((((.((......)))))).))))).).))))) ( -32.20) >DroYak_CAF1 66149 105 + 1 GGGCGAAAAGCCACAGUUGGUCUGAAUUCCUGACUAGCAAAUGUCUGGCUAUCGGCCAUUGGCCAUUGGCCACCGGACAGCACAA--CAAUGGCUGACCAG---CGUCAG .((((...(((((..((((..(((...(((.(((........)))((((((..((((...))))..))))))..))))))..)))--)..)))))......---)))).. ( -40.00) >DroAna_CAF1 61183 84 + 1 GAGCCAAAAGCCAGAGCCGAUCUGAAUUCCUGACUGGCAAAUGUCUG---------------------GCCGCCGGACAACACAA--CAAUGGCUGACCAG---CGUCAG .(((((...(((((....((.......))....)))))...((((((---------------------(...)))))))......--...)))))(((...---.))).. ( -25.60) >consensus GGGCGAAAAGCCAGAGUUGGUCUGAAUUCCUGACUAGCAAAUGUCUGGCUAUCGGCCAU_______UGGCCACCGGACAGCACAA__CAAUGGCUGACCAG___CGUCAG ........(((((..(((((((.........)))))))...((((((......(((((........)))))..))))))...........)))))(((.......))).. (-23.23 = -24.40 + 1.17)
Location | 2,013,476 – 2,013,574 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 82.12 |
Mean single sequence MFE | -34.38 |
Consensus MFE | -23.82 |
Energy contribution | -24.55 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.16 |
Mean z-score | -1.91 |
Structure conservation index | 0.69 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718177 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2013476 98 - 23771897 CUGACG---CUGGUCAGCCAUUG--UUGUGCUGUCCGUUGGCCA-------AUGGCCGAUAGCCAGACAUUUGCUAGUCAGGAAUUCAGACCAACUCUGGCUUUUCGCCC .....(---(.((..(((((..(--(((..(((((((((((((.-------..))))))).....(((........))).)))...)))..))))..)))))..)))).. ( -33.00) >DroSim_CAF1 79099 98 - 1 CUGACG---CUGGUCAGCCAUUG--UUGUGCUGUCCGGUGGCCA-------AUGGCCGAUAGCCAGACAUUUGCUAGUCAGGAAUUCAGACCAACUCUGGCUCUUCGCCC .((.((---((((.((((((...--.)).)))).))))))..))-------..(((.((.(((((((...(((...(((.........)))))).))))))).)).))). ( -34.80) >DroEre_CAF1 70169 98 - 1 CUGACG---CUGGUCAGCCAUUG--UUGUGCUGUCCGGUGGCCA-------AUGGCCGAUAGCCAGACAUUUGCUAGUCAGGAAUUCAGACCAACUGUGGCUUUUCGCCC .((.((---((((.((((((...--.)).)))).))))))..))-------..(((.((.((((((((........))).((........)).....))))).)).))). ( -34.10) >DroWil_CAF1 96867 87 - 1 CUGACACUACUGGUCAGCCAUUGUGUUGUGCUGUCCAGUGGC---------------------CAGACAUUUGCUAGUCAGGAAUUCAGCCCGAC--UGGCUUCUCUGCC ......(((((((.((((((......)).)))).))))))).---------------------((((.....(((((((.((.......)).)))--))))...)))).. ( -34.80) >DroYak_CAF1 66149 105 - 1 CUGACG---CUGGUCAGCCAUUG--UUGUGCUGUCCGGUGGCCAAUGGCCAAUGGCCGAUAGCCAGACAUUUGCUAGUCAGGAAUUCAGACCAACUGUGGCUUUUCGCCC ((((((---((((.((((((...--.)).)))).)))))(((...(((((...)))))...)))............))))).....(((.....))).(((.....))). ( -37.70) >DroAna_CAF1 61183 84 - 1 CUGACG---CUGGUCAGCCAUUG--UUGUGUUGUCCGGCGGC---------------------CAGACAUUUGCCAGUCAGGAAUUCAGAUCGGCUCUGGCUUUUGGCUC ....((---((((.((((((...--.)).)))).))))))((---------------------((((.....(((.(((.........))).)))))))))......... ( -31.90) >consensus CUGACG___CUGGUCAGCCAUUG__UUGUGCUGUCCGGUGGCCA_______AUGGCCGAUAGCCAGACAUUUGCUAGUCAGGAAUUCAGACCAACUCUGGCUUUUCGCCC (((((....((((.((((((......)).)))).))))((((..........((((.....)))).......)))))))))(((...((.(((....))))).))).... (-23.82 = -24.55 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:17 2006