Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,213,992 – 18,214,097 |
Length | 105 |
Max. P | 0.608192 |
Location | 18,213,992 – 18,214,097 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.60 |
Mean single sequence MFE | -31.44 |
Consensus MFE | -24.75 |
Energy contribution | -25.51 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.12 |
Mean z-score | -1.56 |
Structure conservation index | 0.79 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18213992 105 + 23771897 GCCAGUGUGGUUUGGCACUGCCACUUGUGGCACGAUCACAGU----UACAGCACACUAACACAAGGGCAACAACUUUCGCAUUAGGCCAAAUCAACAACAUCAGCAACA----------- ((..((((((((((((..((((.((((((.............----.............))))))))))....((........))))))))))....))))..))....----------- ( -27.87) >DroPse_CAF1 145964 120 + 1 GCCAGUGUUAUUUGGCUUUGCCACUUGUGGCACGAACACACCGCUGUGUGGCACACUAACACAAGGGCAACAACUUUCGCAUUAGGCCAGGCCAACAGCAGCGGCAGCAGCAGUACCAGC (((..((((..(((((((.(((.((((((.......(((((....))))).........))))))(....).............))).))))))).))))..)))............... ( -37.69) >DroSec_CAF1 115581 105 + 1 GCCAGUGUGGUUUGGCACUGCCACUUGUGGCACGAUCACAGU----UACAGCACACUAACACAAGGGCAACAACUUUCGCAUUAGGCCAAAUCAACAACAUCAGCAACA----------- ((..((((((((((((..((((.((((((.............----.............))))))))))....((........))))))))))....))))..))....----------- ( -27.87) >DroEre_CAF1 117472 105 + 1 GCCAGUGUCGCUUGGCACUGCCACUUGUGGCACGAUCACAGU----UACAGCACACCAACACAAGGGCAACAACUUUCGCAUUAGGCCAAAUCAACAACAUCGGCAACA----------- (((.((((.(.(((((..((((.((((((.............----.............))))))))))....((........))))))).....).)))).)))....----------- ( -26.07) >DroPer_CAF1 135129 120 + 1 GCCAGUGUUAUUUGGCUUUGCCACUUGUGGCACGAACACACCGCUGUGUGGCACACUAACACAAGGGCAACAACUUUCGCAUUAGGCCAGGCCAACAGCAGCGGCAACAGCACUACCAGC (((..((((..(((((((.(((.((((((.......(((((....))))).........))))))(....).............))).))))))).))))..)))............... ( -37.69) >consensus GCCAGUGUGGUUUGGCACUGCCACUUGUGGCACGAUCACAGU____UACAGCACACUAACACAAGGGCAACAACUUUCGCAUUAGGCCAAAUCAACAACAUCGGCAACA___________ (((.((((.(((((((..((((.((((((..............................))))))))))....((........))))))))).....)))).)))............... (-24.75 = -25.51 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:44 2006