Locus 6777

Sequence ID 3L_DroMel_CAF1
Location 18,203,778 – 18,203,888
Length 110
Max. P 0.850306
window11010

overview

Window 0

Location 18,203,778 – 18,203,888
Length 110
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 81.90
Mean single sequence MFE -23.73
Consensus MFE -17.88
Energy contribution -18.50
Covariance contribution 0.62
Combinations/Pair 1.08
Mean z-score -1.89
Structure conservation index 0.75
SVM decision value 0.79
SVM RNA-class probability 0.850306
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18203778 110 - 23771897
CUAAUU-------AAUUA-UUUUUUAGCAGUGUACCCAUUUCUAUCCCCCCAUCUCAUUGUAUUUGUUUUGGUUUGUGGGUUCUGUUGUAGUUUUUAUUAUGACUUGCAACUGUGCGC
......-------.....-..........((((((............(((((..(((............)))..)).)))....(((((((((........))).)))))).)))))) ( -18.60)
>DroSec_CAF1 105574 107 - 1
AAAAUUAUAUAUUAAUUG-UUUUUUAGUAGUGUACCUA----------CCCAUCCCAUUGUAUUUGUUUUGGCUUGUGGGUUCUGUUGUAGUUUUUGUUAUGACUUGCAACUGUGCGC
.........((((((...-....))))))((((((..(----------(((((.(((............)))...))))))...(((((((((........))).)))))).)))))) ( -22.70)
>DroSim_CAF1 106310 101 - 1
CUAAUU-------AAUUGAUUUUUUAGUAGUGUACCUA----------CCCAUCCCAUUGUAUUUGUUUUGGGUUGUGGGUUCUGUUGUAGUUUUUGUUAUGACUUGCAACUGUGCGC
......-------.(((((....))))).((((((..(----------(((((((((............))))..))))))...(((((((((........))).)))))).)))))) ( -25.10)
>DroEre_CAF1 107609 110 - 1
UUGAUU-------AAAUA-UUUUGUAGAAGUGUACCCAUUUCUAUCUCCCCGUCCCAUUGUAUUUCUUUGGGGUUGUGGGUUCUGUUGUAGUUAUUAUUAUGACUUGCAACUGUGGGC
......-------.....-....(((((((((....)))))))))...((((.((((..(.....)..))))((((..((((.....(((((....)))))))))..))))..)))). ( -28.50)
>consensus
CUAAUU_______AAUUA_UUUUUUAGUAGUGUACCCA__________CCCAUCCCAUUGUAUUUGUUUUGGGUUGUGGGUUCUGUUGUAGUUUUUAUUAUGACUUGCAACUGUGCGC
.............................((((((.............(((((((((............))))..)))))....(((((((((........))).)))))).)))))) (-17.88 = -18.50 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:41 2006