| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,199,580 – 18,199,686 |
| Length | 106 |
| Max. P | 0.920763 |
| Location | 18,199,580 – 18,199,686 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 96.21 |
| Mean single sequence MFE | -20.31 |
| Consensus MFE | -20.32 |
| Energy contribution | -20.10 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.95 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.920763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18199580 106 - 23771897 AACAAAAUCAAAAAAGAAAACUGGUCAACUUAAUCAAAGAGCGGAGAAUCCAGAAGAUUUGCUGCUCACAGAUCUCCAAAGAGCACGACAUUUUCAGAGAAAUGCA ...............(((((...(((............((((((..((((.....))))..))))))......(((....)))...))).)))))........... ( -20.50) >DroSec_CAF1 101299 105 - 1 AACAAAAUCAAA-AAGAAAACUGGUCAACUUAAUCAAAGAGCGGAGAAUCCAGAAGAUUUGCUGCUCACAGAUCUCCAAAGAGCACGGCAUUUUCACAGAAAUCCA ............-..(((((...(((............((((((..((((.....))))..))))))......(((....)))...))).)))))........... ( -19.90) >DroSim_CAF1 102123 105 - 1 AACAAAAUCAAA-AAGAAAACUGGUCAACUUUAUCAAAGAGCGGAGAAUCCAGAAGAUUUGCUGCUCACAGAUCUCCAAAGAGCACGGCAUUUUCACCGAAAUGCA ............-........((.((......(((...((((((..((((.....))))..))))))...))).......)).))..(((((((....))))))). ( -20.52) >consensus AACAAAAUCAAA_AAGAAAACUGGUCAACUUAAUCAAAGAGCGGAGAAUCCAGAAGAUUUGCUGCUCACAGAUCUCCAAAGAGCACGGCAUUUUCACAGAAAUGCA ...............(((((...(((............((((((..((((.....))))..))))))......(((....)))...))).)))))........... (-20.32 = -20.10 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:40 2006