Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,197,171 – 18,197,261 |
Length | 90 |
Max. P | 0.617051 |
Location | 18,197,171 – 18,197,261 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 84.10 |
Mean single sequence MFE | -19.92 |
Consensus MFE | -14.89 |
Energy contribution | -15.29 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.75 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18197171 90 - 23771897 UCGUGGCACACACACAGAGCAGUGGCUUUGUCC-CCAGCUGUAC-CAUUACCACACAGAACCA--------------------CACUCUGAGUACCACUUCGCCUCCA-ACUU ..((((.((.....(((((..((((.(((((..-..........-.........))))).)))--------------------).))))).)).))))..........-.... ( -18.30) >DroSec_CAF1 99005 88 - 1 UCGUGGCACA--CACAGAGCAGUGGCUUUGUCCCCCAGCUGUACCCAGUACCACACAGAACGG--------------------CACUCUGAAUCCCACUU---CUCCAAACUU ..((((....--.(((((((....)))))))......((((....)))).)))).((((....--------------------...))))..........---.......... ( -18.70) >DroSim_CAF1 99815 83 - 1 UCGUGGCGCA--CACAGAGCAGUGGCUUUGUUC-CCAGCUGUAC-CAGUACCACACAGAACCG--------------------CACUCUGA-UCCCACU----CUCCA-ACUU ..((((.(..--..(((((..((((.(((((..-...((((...-)))).....))))).)))--------------------).))))).-.))))).----.....-.... ( -21.60) >DroEre_CAF1 100872 85 - 1 UCGUGGCACA--CACAGAGCAGUGGCUUUGUCC-CCAGCUGUAC-CAGUACCACACAGAACCG--------------------CACUCUGAAUCCCACUU---CUCCA-ACUU ..((((....--..(((((..((((.(((((..-...((((...-)))).....))))).)))--------------------).)))))....))))..---.....-.... ( -21.60) >DroYak_CAF1 104823 105 - 1 UCGUGGCACA--CACAGAGCAGUGGCUUUGUCC-CCAGCUGUAC-CAGUACCACACAGAACCACACAGAACCACAGAGCACCACACGCUGAAUCCCACUU---CUCCA-ACUU ..(((.....--))).(((.(((((.(((((..-....((((..-.........))))......))))).......(((.......))).....))))).---)))..-.... ( -19.40) >consensus UCGUGGCACA__CACAGAGCAGUGGCUUUGUCC_CCAGCUGUAC_CAGUACCACACAGAACCG____________________CACUCUGAAUCCCACUU___CUCCA_ACUU ..((((.......(((((((....)))))))......((((....)))).)))).((((...........................))))....................... (-14.89 = -15.29 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:39 2006