Locus 6774

Sequence ID 3L_DroMel_CAF1
Location 18,190,834 – 18,190,924
Length 90
Max. P 0.759160
window11007

overview

Window 7

Location 18,190,834 – 18,190,924
Length 90
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 80.64
Mean single sequence MFE -30.70
Consensus MFE -22.58
Energy contribution -22.67
Covariance contribution 0.08
Combinations/Pair 1.05
Mean z-score -1.56
Structure conservation index 0.74
SVM decision value 0.50
SVM RNA-class probability 0.759160
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18190834 90 - 23771897
--------UCUGUCUGGCC-AGUCCAUGAUAGAUCACCCCAUGGACAAAUGCAGACAGGUGAAACUUGUCAGUCAGUGCGGGUCGGGAUCGG--AAUCGGA---
--------(((((((((((-.(((((((...........)))))))...((((((((((.....))))))......)))))))))))..)))--)......--- ( -30.60)
>DroPse_CAF1 123898 93 - 1
CCAGACAGUCUGUCCGGCAGGGUCCAUGAUAGAUCACCCCAUGGACAAAUACAGACAGGUGAAACUUGUCAGUCUGUCCA--UCAGGG-AGG--AACC------
((.(((.....))).))..((.(((.(((....)))(((.(((((((...((.((((((.....)))))).)).))))))--)..)))-.))--).))------ ( -30.10)
>DroSec_CAF1 92829 93 - 1
--------UCUGUCUGGCC-AGUCCAUGAUAGAUCACCCCAUGGACAAAUGCAGACAGGUGAAACUUGUCAGUCAGUGCGGGUCGGGAUCGG--AAUCGGAGCA
--------(((((((((((-.(((((((...........)))))))...((((((((((.....))))))......)))))))))))..)))--)......... ( -30.60)
>DroSim_CAF1 93516 93 - 1
--------UCUGUCUGGCC-AGUCCAUGAUAGAUCACCCCAUGGACAAAUGCGGACAGGUGAAACUUGUCAGUCAGUGCGGGUCGGGAUCGG--AAUCGGAGCA
--------(((((((((((-.(((((((...........)))))))....((.((((((.....)))))).)).......)))))))..)))--)......... ( -29.90)
>DroAna_CAF1 101629 92 - 1
--------UCUGUCUGGCC-AGUCCAUGAUAGAUCACCCCAUGGACAAAUACGGACAGGUGAAACUUGUCAGUCAGUCAGAGCCAGGGCCUGGGGAUCGUA---
--------((((.(((((.-.(((((((...........))))))).......((((((.....)))))).))))).)))).((((...))))........--- ( -32.90)
>DroPer_CAF1 113010 93 - 1
CCAGACAGUCUGUCCGGCAGGGUCCAUGAUAGAUCACCCCAUGGACAAAUACAGACAGGUGAAACUUGUCAGUCUGUCCA--UCAGGG-AGG--AACC------
((.(((.....))).))..((.(((.(((....)))(((.(((((((...((.((((((.....)))))).)).))))))--)..)))-.))--).))------ ( -30.10)
>consensus
________UCUGUCUGGCC_AGUCCAUGAUAGAUCACCCCAUGGACAAAUACAGACAGGUGAAACUUGUCAGUCAGUCCGGGUCAGGAUCGG__AAUCGGA___
........((((.(((((...(((((((...........))))))).......((((((.....)))))).))))).......))))................. (-22.58 = -22.67 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:38 2006