Locus 6773

Sequence ID 3L_DroMel_CAF1
Location 18,190,000 – 18,190,097
Length 97
Max. P 0.633860
window11006

overview

Window 6

Location 18,190,000 – 18,190,097
Length 97
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 77.40
Mean single sequence MFE -25.56
Consensus MFE -16.49
Energy contribution -17.66
Covariance contribution 1.17
Combinations/Pair 1.05
Mean z-score -1.32
Structure conservation index 0.65
SVM decision value 0.21
SVM RNA-class probability 0.633860
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18190000 97 + 23771897
---------UUCCUGGCCCCUGAACCUU---CCCC-GCCCCUU-GCCAUCUUCCCGUGGUCCCUAGGCGGCUCUCGGCACUUGUGCUCAGCACACUCUGCAAGUGUGUC-CC
---------..........((((.....---..((-(((....-(((((......))))).....)))))......(((....)))))))((((((.....))))))..-.. ( -25.30)
>DroSec_CAF1 92011 93 + 1
----------CCCUGGCCCCUGAACCUU---CCCC-GCCCCAU-GCCAUCCACUCGGGGUCCCUAGG---CUCUCUGCACUUGUGCUCAGCACACUCUGCAAGUGUGUC-CC
----------.(((((.((((((.....---....-((.....-)).......))))))...)))))---......(((....)))...(((((((.....))))))).-.. ( -23.19)
>DroSim_CAF1 92687 93 + 1
----------CCCUGGCCCCUGAACCUU---CCCC-GCCCCAU-GCCAUCCACUCGGGGUCCCUAGG---CUCUCUGCACUUGUGCUCAGCACACUCUGCAAGUGUGUC-CC
----------.(((((.((((((.....---....-((.....-)).......))))))...)))))---......(((....)))...(((((((.....))))))).-.. ( -23.19)
>DroEre_CAF1 94220 87 + 1
----------CCCUGGCCCCUGAACCUU---CCCC-GUUCCAA-GGG------UCGGGGUCCCUAGG---CUCCCUGCACUUGUGCUCAGCACACUCUGCAAGUGUGUC-CC
----------(((((((((..((((...---....-))))...-)))------))))))......((---(.((.((((..(((((...)))))...)))).).).)))-.. ( -31.20)
>DroYak_CAF1 97855 98 + 1
-----CUGCUCCCUGGCCCCUGAACCUU---CCCC-UACUCAU-UGUAUUUUCCCGGGGUCCCUAGG---UUGCCUGCACUUGUGCUCAGCACACUCUGCAAGUGUGUC-UC
-----..((..(((((((((.((....)---)...-(((....-.))).......))))))...)))---..))..(((....)))...(((((((.....))))))).-.. ( -24.90)
>DroAna_CAF1 100999 109 + 1
GGCUCCCGGUCCCUGAUCCCUGGACCCUAUGCCCUUUUCCCAUUAUUAUUCUCCCUCGUUACAAAGG---GUCCCUGCACUUGUGCCCAGCACACUCUGCAAGUGUGUCUCC
(((....(((((..(....).)))))....)))...................((((........)))---).....(((....)))...(((((((.....))))))).... ( -25.60)
>consensus
__________CCCUGGCCCCUGAACCUU___CCCC_GCCCCAU_GCCAUCCUCCCGGGGUCCCUAGG___CUCCCUGCACUUGUGCUCAGCACACUCUGCAAGUGUGUC_CC
...........(((((.((((((..............................))))))...))))).........(((....)))...(((((((.....))))))).... (-16.49 = -17.66 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:37 2006