Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,186,074 – 18,186,189 |
Length | 115 |
Max. P | 0.960465 |
Location | 18,186,074 – 18,186,189 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.52 |
Mean single sequence MFE | -18.37 |
Consensus MFE | -18.39 |
Energy contribution | -17.40 |
Covariance contribution | -0.99 |
Combinations/Pair | 1.18 |
Mean z-score | -1.17 |
Structure conservation index | 1.00 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18186074 115 + 23771897 UUCAAGCUUUAAAAUAAGCAUGUCAAAAAAUUGGAAAUUGUAUCCAAAA-ACAUUAGGAGAAAAAGGUCUUACUGACAUU----AAUGUCAUGAAUAUAACCGAUACAUAUAUAAAAUAA .....((((......)))).((((......(((((.......)))))..-...............(((..((.(((((..----..)))))....))..))))))).............. ( -16.20) >DroSec_CAF1 88125 120 + 1 UUUAAGCUUUAAAUUGAGUAUUACAAAGAAUUGGAAAUUAUAUUCCAAAAAAUUUCGGAGAAAAAUGUCUUACUGGCAUAUAUGUAUGUCAUGAAUAUAACCGAUACAUACAUACAAUAA .....((((......))))...........((((((......))))))................(((((.....))))).(((((((((..((........))..)))))))))...... ( -18.90) >DroSim_CAF1 88813 119 + 1 UUUAAGCUUAAAAUUGAGUUUUACAAAGAAUUGGAAAUUAUAUUCCAAA-AAUUUCGGAGAAAAAUGUCUUACUGGCAUAUAUGUAUGUCAUGAAUAUAACCGAUACAUACAUACAAUAA ...(((((((....))))))).........((((((......)))))).-..............(((((.....))))).(((((((((..((........))..)))))))))...... ( -20.00) >consensus UUUAAGCUUUAAAUUGAGUAUUACAAAGAAUUGGAAAUUAUAUUCCAAA_AAUUUCGGAGAAAAAUGUCUUACUGGCAUAUAUGUAUGUCAUGAAUAUAACCGAUACAUACAUACAAUAA .....((((......))))..........(((((...((((((((............((((......))))..(((((((....))))))).)))))))))))))............... (-18.39 = -17.40 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:36 2006