Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,184,996 – 18,185,111 |
Length | 115 |
Max. P | 0.789392 |
Location | 18,184,996 – 18,185,111 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 81.40 |
Mean single sequence MFE | -22.66 |
Consensus MFE | -13.12 |
Energy contribution | -13.99 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.09 |
Mean z-score | -2.59 |
Structure conservation index | 0.58 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789392 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18184996 115 - 23771897 CCAUGAUCGCUAAGCGAUUUUCCCUUUUCCUUUGUGCAAUCUACAUAUGUAUCUAUGUAUAUGUAUGUCUGCAGGUAUAAUCACUAUAC---UAUAUACAUACUAUAUCAGACUAAUC ....((((((...))))))..............(((((...((((((......))))))..)))))(((((..((((((.....)))))---)(((((.....))))))))))..... ( -19.80) >DroSec_CAF1 87007 103 - 1 CCACGGUCG-----CGAUUUUUCCUUUUUCUUUGUGCAAUGUAUGUAUGU----------AUGCAUGUCUGCACAUAUAAUCAAUAUAUAUGUAGACACAUACUAUAUCAGACUAAUC ....(((((-----((..................)))..((.(((((.((----------(((..((((((((.(((((.....))))).)))))))))))))))))))))))).... ( -24.47) >DroSim_CAF1 87714 108 - 1 CCACGAUCGCUAAGCGAUUUUUCCUUUUUCUUUGUGCAAUGUAUGUAUGU----------AUGCAUGUCUGCACAUAUAAUCAAUAUAUAUGUAGAUACAUACUAUAUCAGACUAAUC .(((((.....(((.((....))))).....)))))...((.(((((.((----------(((..((((((((.(((((.....))))).))))))))))))))))))))........ ( -23.70) >consensus CCACGAUCGCUAAGCGAUUUUUCCUUUUUCUUUGUGCAAUGUAUGUAUGU__________AUGCAUGUCUGCACAUAUAAUCAAUAUAUAUGUAGAUACAUACUAUAUCAGACUAAUC ....((((((...))))))...........((((....(((((.((((((................(((((((.(((((.....))))).))))))))))))))))))))))...... (-13.12 = -13.99 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:35 2006