| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,180,026 – 18,180,117 |
| Length | 91 |
| Max. P | 0.686256 |
| Location | 18,180,026 – 18,180,117 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 78.10 |
| Mean single sequence MFE | -16.88 |
| Consensus MFE | -10.15 |
| Energy contribution | -10.77 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18180026 91 + 23771897 GAACG-UCAUUCC--CAGUCGAACAUUCAGCAAGAUUAAUUACCGCAUUAAUUAACUGACCCGAA-AAGCGAAAGUUUU-GCA-ACA-AAAAUUACUC ....(-(((....--..((.((....)).))..(((((((......)))))))...))))..(.(-((((....)))))-.).-...-.......... ( -11.00) >DroVir_CAF1 94836 90 + 1 AAACAGACAGUCA--GAGUCAGA----CAGUAAGAUUAAUUAUCGCAUUAAUUAACUGACCUCAAAAAACGAAAGUUUC-GCG-AAUUUAAAUGUGCC ..(((.....((.--(((((((.----(.....).(((((((......))))))))))).)))...((((....)))).-..)-).......)))... ( -13.50) >DroPse_CAF1 111688 81 + 1 ---------------GGGGCGGACAGUCAGUAAGAUUAAUUAUGGCAUUAAUUAACUGACCUGAAAAAACGAAAGUUUU-GCC-AUAUAAAAUUACUC ---------------..(((...((((((((..(((((((......))))))).))))).)))..(((((....)))))-)))-.............. ( -20.90) >DroEre_CAF1 84751 91 + 1 GAACG-UCAUUCC--CAGUCGGACAGUCAGCAAGAUUAAUUAUCGCCUUAAUUAACUGACCCGAA-AAGCGAAAGUUUU-GCA-AAC-AAAAUUACUC .....-.......--...((((...(((((.....(((((((......))))))))))))))))(-((((....)))))-...-...-.......... ( -16.80) >DroYak_CAF1 86175 92 + 1 GAACG-UCAUUCC--CAGUCGGACAGUCAGCAAGAUUAAUUAUCGCAUUAAUUAACUGACCCGAA-AAGCGAAAGUUUU-GCGCAAA-AAAAUUACUC ...((-(......--...((((...(((((...(((((((......)))))))..)))))))))(-((((....)))))-)))....-.......... ( -18.50) >DroAna_CAF1 90698 95 + 1 AGGCG-UCAUCCCCUCACUGAGACAGUCAGCAAGAUUAAUUAUCGCAUUAAUUAACUGACCUGAAAAAACGAAAGUUUUCGCC-ACA-AAAAUUACUC .((((-.................(((((((...(((((((......)))))))..)))).)))..(((((....)))))))))-...-.......... ( -20.60) >consensus GAACG_UCAUUCC__CAGUCGGACAGUCAGCAAGAUUAAUUAUCGCAUUAAUUAACUGACCCGAA_AAACGAAAGUUUU_GCA_AAA_AAAAUUACUC ..................((((...(((((...(((((((......)))))))..)))))))))..((((....)))).................... (-10.15 = -10.77 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:34 2006