| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,008,432 – 2,008,531 |
| Length | 99 |
| Max. P | 0.972453 |
| Location | 2,008,432 – 2,008,531 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 76.01 |
| Mean single sequence MFE | -21.15 |
| Consensus MFE | -12.31 |
| Energy contribution | -12.08 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.972453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2008432 99 + 23771897 ----------GCCGAUUUCGUUCAGCUAUAAAUUUUUGCAUAUUUUCAUUAGUUGUCAGAAA---UGCUUUUGAUGAUUUAUGCAUGUUU-UUGACGCU---CUUUCGGUUCGCCU ----------(((((...(((.(((....((((...((((((...(((((((..(.((....---)))..)))))))..)))))).))))-))))))..---...)))))...... ( -24.00) >DroVir_CAF1 61330 92 + 1 ----------GUCGAUUU-G-GCUGCUAUAAAUUUUUGCAUGCUUUCAUUAGUUGUCAGCGU---UGCUUUUGAUGAUUUAUGCAUGUUUUUUAGAUAU---GUC------CACUU ----------(((.....-(-(((((.(((((((...(((((((..((.....))..)))).---))).......)))))))))).))).....)))..---...------..... ( -17.00) >DroGri_CAF1 57007 92 + 1 ----------GCCGUUUUCA-GCUGCCAUAAAUUUUUGCAUGUUUUCAUUAGUUGUCAGCCU---UGCUUUUGAUGAUUUAUGCAUGUUU-UUGAUGCU---GUC------CAUUG ----------........((-((...((.((((...((((((...(((((((..((......---.))..)))))))..)))))).))))-.))..)))---)..------..... ( -20.20) >DroWil_CAF1 88160 112 + 1 GUUUUAGCUCGUCGAUUUC-UGUAGCUAUAAAUUUUUGCAUGUUUUCAUUAGUUGUCAGCCUUGCUGCUUUUGAUGAUUUAUGCAUGUUU-UUGAUGCCACCAUUUCU-UUCUCC- ....(((((((........-)).)))))((((..(.((((((...(((((((..(.((((...)))))..)))))))..)))))).)..)-)))..............-......- ( -22.30) >DroMoj_CAF1 69367 92 + 1 ----------GUCGAUUUCG-GCUGCUAUAAAUUUGUGCAUGUUUUCAUUAGUUGUCAGCGC---UGCUUUUGAUGAUUUAUGCAUGUUU-UUGCAUCC---AUC------CACUU ----------((((....))-))(((...((((..(((((((...(((((((..(.((....---)))..)))))))..)))))))))))-..)))...---...------..... ( -22.10) >DroAna_CAF1 56438 92 + 1 ----------GCCGAUUUCGCCGAGCUAUAAAUUUUUGCAUAUUUUCAUUAGUUGUCAGCGC---UGCUUUUGAUGAUUUAUGCAUGUUU-UUGAUGCU---CUUUCU-C------ ----------(.((....)).)((((..((((..(.((((((...(((((((..(.((....---)))..)))))))..)))))).)..)-)))..)))---).....-.------ ( -21.30) >consensus __________GCCGAUUUCG_GCAGCUAUAAAUUUUUGCAUGUUUUCAUUAGUUGUCAGCGU___UGCUUUUGAUGAUUUAUGCAUGUUU_UUGAUGCU___AUC______CACUU ....................................((((((...(((((((..((..........))..)))))))..))))))............................... (-12.31 = -12.08 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:15 2006