Locus 6769

Sequence ID 3L_DroMel_CAF1
Location 18,179,249 – 18,179,357
Length 108
Max. P 0.724798
window11002

overview

Window 2

Location 18,179,249 – 18,179,357
Length 108
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 76.92
Mean single sequence MFE -32.33
Consensus MFE -16.19
Energy contribution -17.83
Covariance contribution 1.64
Combinations/Pair 1.13
Mean z-score -1.96
Structure conservation index 0.50
SVM decision value 0.41
SVM RNA-class probability 0.724798
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18179249 108 - 23771897
GUAUGAGAGUAUCAGA----GUAUCUGAGUAUCUGAGUAUCCGAGAGAUGUCAAGAUACACGGAC----CGAGUUCGCUACUGCGACUUGGACUUGAUGCACACCUGCACCUCGCC
(((.(.(.((((((.(----((.((((.((((((((.((((.....)))))).)))))).))))(----(((((.(((....)))))))))))))))))).).).)))........ ( -35.60)
>DroVir_CAF1 93841 104 - 1
G-ACGAGAGCGUUACGUUUUGUAUCU--GUAUCU--GUAUCUGUAAGAUAUCAAGAUACAGGCACACACGGAG-CAGCUACUGCGAC------UUGAUGCACACCUGCACGUUGGC
(-(((((((((((.(((..(((..((--((((((--(((((.....)))))..))))))))..))).))).))-).))).)).....------....((((....))))))))... ( -30.60)
>DroSec_CAF1 81116 92 - 1
GUA--------UCAGA----GUAUC--------UGAGUAUCCGAGAGAUGUCAAGAUACACGGAC----CGAGUUCGCUACUGCGACUUGGACUUGAUGCACACCUGCACCUCGCC
(((--------((((.----(((((--------(((.((((.....)))))).)))))).....(----(((((.(((....)))))))))..)))))))......((.....)). ( -29.20)
>DroSim_CAF1 81671 100 - 1
GUA--------UCAGA----GUAUCUGAGUAUCUGAGUAUCCGAGAGAUGUCAAGAUACACGGAC----CGAGUUCGCUACUGCGACUUGGACUUGAUGCACACCUGCACCUCGCC
(((--------(((.(----((.((((.((((((((.((((.....)))))).)))))).))))(----(((((.(((....))))))))))))))))))......((.....)). ( -34.10)
>DroEre_CAF1 83724 100 - 1
GUA--------UCCGA----GUAUCGUAGUAUCGGAGUAUCCGAGAGAUGUCAAGAUACACGGAC----CGAGUUCGCUACUGCGACUUGGACUUGAUGCACACCUGCACCUCGCC
...--------((((.----(((((...((.((((.....))))...)).....))))).))))(----(((((.(((....)))))))))......((((....))))....... ( -32.50)
>DroAna_CAF1 90087 88 - 1
--------------------GUAUCU--GUAUCU--GUAACUGAGAGAUGUCAAGAUACACGAAC----UGAGUUCGCUACUGCGACUCGGACUUGAUGCACACCUGCAUCUCGUU
--------------------((((((--((((((--.(.....).))))).).))))))((((.(----(((((.(((....)))))))))....((((((....)))))))))). ( -32.00)
>consensus
GUA________UCAGA____GUAUCU__GUAUCUGAGUAUCCGAGAGAUGUCAAGAUACACGGAC____CGAGUUCGCUACUGCGACUUGGACUUGAUGCACACCUGCACCUCGCC
....................(((((...((((((...((((.....))))...))))))..........(((((.(((....)))))))).....)))))................ (-16.19 = -17.83 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:33 2006