Locus 6768

Sequence ID 3L_DroMel_CAF1
Location 18,172,422 – 18,172,540
Length 118
Max. P 0.923695
window11001

overview

Window 1

Location 18,172,422 – 18,172,540
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.37
Mean single sequence MFE -22.98
Consensus MFE -18.32
Energy contribution -18.72
Covariance contribution 0.40
Combinations/Pair 1.08
Mean z-score -2.03
Structure conservation index 0.80
SVM decision value 1.16
SVM RNA-class probability 0.923695
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18172422 118 - 23771897
CCAGUUAA--GUUCGUUUCAAAACAAAAACAUCCACAAUCACCUACCCCAACAAGGCCAUUAAAAUGUGCCAAGAGUGACCCACUUUCACUGUCCAGAGAAUGUGAACAACAGCUGUCAG
.(((((..--((((((((........))))....(((.((..............((((((....))).)))...(((((.......))))).......)).)))))))...))))).... ( -20.90)
>DroSec_CAF1 74106 117 - 1
CCAGUUAAGAGUUAAUUUCAAAACAAAAACAUCCACAAUCACCUACCCCAACAAGGUCAUUAAAAUGUGCCAACAGUGACCCACUUUCACUGCCCAGAGAAUGUGAA---CAGCUGUCAG
.(((((..(((.....)))..............((((.((..............((.(((......)))))..((((((.......))))))......)).))))..---.))))).... ( -20.10)
>DroSim_CAF1 74691 117 - 1
CCAGUUAAGAGUCCAUUUCAAAACAAAAACAUCCACAAUCACCUACCCCAACAAGGCCAUUAAAAUGUGCCAACAGUGACCCACUUUCACUGCCCAGAGAAUGUGAA---CAGCUGUCAG
.(((((..(((.....)))..............((((.((..............((((((....))).)))..((((((.......))))))......)).))))..---.))))).... ( -22.40)
>DroEre_CAF1 75797 115 - 1
CCAGUUAA--GUUUGUUUCAAAACAAAAACAUCCACAAUCACCUACCCCAACAAGGCCAUUAAAAUGCGCCAACGGUGACCCACUUUCACUGCCCGGAGAAUGUGAA---CAGCUGUCAG
.(((((..--.((((((....))))))......((((.((.((...........((((((....))).)))..((((((.......))))))...)).)).))))..---.))))).... ( -26.00)
>DroYak_CAF1 77394 115 - 1
CCAGUUGA--UUGCAUUUCAAAACAAAAACAUCCACAAUCACCUACCCCAACAAGGCCAUUAAAAUGUGCCAACGGUGACCCACUUUCACUGCCCAGAGAAUGUGAA---CAGCUGUCAG
.((((((.--(..((((((...................................((((((....))).)))..((((((.......))))))....))).)))..).---)))))).... ( -25.50)
>consensus
CCAGUUAA__GUUCAUUUCAAAACAAAAACAUCCACAAUCACCUACCCCAACAAGGCCAUUAAAAUGUGCCAACAGUGACCCACUUUCACUGCCCAGAGAAUGUGAA___CAGCUGUCAG
.(((((....(((........))).........((((.((..............((((((....))).)))..((((((.......))))))......)).))))......))))).... (-18.32 = -18.72 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:32 2006