| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,155,660 – 18,155,760 |
| Length | 100 |
| Max. P | 0.889399 |
| Location | 18,155,660 – 18,155,760 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 73.39 |
| Mean single sequence MFE | -34.45 |
| Consensus MFE | -18.79 |
| Energy contribution | -18.52 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.889399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18155660 100 - 23771897 GGUGGCAG---GGAAGGGGGCGUGCUGCCUCCUCUCUUAUCAAGAGCAGGUCAUCGGGAGAUGGCAGAUGCUGAUUGCAAGGGGGG--GGGGGAGGUGCUCAGCA ........---......((((((.((.(((((((((((..(((.((((.((((((....))))))...))))..)))..)))))))--)))).)))))))).... ( -42.00) >DroSec_CAF1 57260 94 - 1 GGGGGCUG---GGAAGGGGGCGUGCUGCCUCCGCUCUUAUCAAGAGCAGGUCAUCGGGAGAUGGCAGAUGCUGAUUGCAGGCGGGG--AAG------GCUGAGCA ....(((.---((..((((((.....))))))((.((...(((.((((.((((((....))))))...))))..))).))))....--...------.)).))). ( -35.80) >DroSim_CAF1 57810 83 - 1 ------------GAAGGGGGCGUGCUGCCUCCGCUCUUAUCAAGAGCAGGUCAUCGGGAGAUGGCAGAUGCUGAUUGCAGGCGG----AGG------GCUCAGCA ------------..........((((((((((((.((...(((.((((.((((((....))))))...))))..))).))))))----)))------...))))) ( -36.10) >DroEre_CAF1 58647 80 - 1 GGUGGCAA--GGGGCUGG-------------UGCUCUUAUCAAGAGCAGGUCAUCGGGAGAUGGCAGAUGCUGAUUGCAGGCGG----GGG------GCUCAGCA ........--...(((((-------------.((((((.((((.((((.((((((....))))))...))))..))).)....)----)))------))))))). ( -29.60) >DroYak_CAF1 59468 99 - 1 GGUGUCAGAGGGGGCGGGGGCGUGCUGCCUCUGGUCUUAUCAAGAGCAGGUCAUCGGGAGAUGGCAGAUGCUGAUUGCAGGCGGGAGGGGG------GCUCAGCA .............((..((((...((.(((((.((((...(((.((((.((((((....))))))...))))..))).)))).))))).))------)))).)). ( -40.00) >DroPer_CAF1 71897 82 - 1 GGGUG-AUUGGGGGU-------AGAGGCAGCUGUUCUUAUCAAGAGCAGGUCAUCG--AGAUGCCAGAUGCUGAUUGCGGGCGGGG----G---------CAACA .((((-((.....((-------....))..(((((((.....))))))))))))).--.(.((((...((((.......))))..)----)---------)).). ( -23.20) >consensus GGUGGCAG___GGAAGGGGGCGUGCUGCCUCCGCUCUUAUCAAGAGCAGGUCAUCGGGAGAUGGCAGAUGCUGAUUGCAGGCGGGG__GGG______GCUCAGCA ..............................(((((...((((...(((.((((((....))))))...)))))))....)))))..................... (-18.79 = -18.52 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:29 2006