| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,154,128 – 18,154,219 |
| Length | 91 |
| Max. P | 0.624458 |
| Location | 18,154,128 – 18,154,219 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 94.32 |
| Mean single sequence MFE | -20.60 |
| Consensus MFE | -17.90 |
| Energy contribution | -18.15 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624458 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18154128 91 - 23771897 GUUGUUGCUGCUGCCGGCUGCUACUUAUGGCAAAUAUGAAUUAUUAUUUAUUUUUAUUGAAGCGAACGGCGGCGUUUUCGUCACAAUUUUU (((((.((((((((((..((((.(..((((.....((((((....))))))..)))).).))))..)))))))).....)).))))).... ( -22.50) >DroSec_CAF1 56536 85 - 1 GUU------GCUGCCGGCUGCUACUUAUGGCAAAUAUGAAUUAUUAUUUAUAUUUAUUGAAGCGAACGGCGGCGUUUUCGUCACAAUUUUU ...------(((((((..((((..(((....((((((((((....))))))))))..)))))))..))))))).................. ( -24.20) >DroSim_CAF1 57107 85 - 1 GUU------GCUGCCGACUGCUACUUAUGGCAAAUAUGAAUUAUUAUUUAUUUUUAUUGAAGCGAACGGCGGCGUUUUCGUCACAAUUUUU ...------(((((((...((((....))))(((.((((((....)))))).)))...........))))))).................. ( -18.80) >DroEre_CAF1 57624 85 - 1 GUU------GCUGCCGGCUGCUACUUAGGGCAAAUAUGAAUUAUUAUUUAUUUUUAUUGAAGCGAACAGCGGCGUUUUCGUCACAAUUUUU (((------((((...((((((......)))(((.((((((....)))))).))).....)))...))))))).................. ( -16.90) >consensus GUU______GCUGCCGGCUGCUACUUAUGGCAAAUAUGAAUUAUUAUUUAUUUUUAUUGAAGCGAACGGCGGCGUUUUCGUCACAAUUUUU .........(((((((..((((..(((....(((.((((((....)))))).)))..)))))))..))))))).................. (-17.90 = -18.15 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:27 2006