Locus 6764

Sequence ID 3L_DroMel_CAF1
Location 18,152,805 – 18,152,895
Length 90
Max. P 0.756226
window10996

overview

Window 6

Location 18,152,805 – 18,152,895
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 81.94
Mean single sequence MFE -16.72
Consensus MFE -10.76
Energy contribution -11.16
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.64
SVM decision value 0.49
SVM RNA-class probability 0.756226
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18152805 90 + 23771897
GUAUGGAUGAACAUACAUGAAUAUGUACAUUAUGCAAGGAUUUCCCAAGAUGACGAAAUUCAAGCACACUCUUGCACAAAACGACAUAAA
(((((......))))).....(((((......((((((((((((..........))))))..........)))))).......))))).. ( -15.32)
>DroSec_CAF1 55276 90 + 1
GUAUGGAUGUACAUACAUAUUUAUGUACAUUAUGCAAGGAUUUCCCAAGAUGACGAAAUUCAAGCACACUCUUGCACAAAACGGCAUAAA
.....((((((((((......))))))))))((((..(((((((..........)))))))..(((......)))........))))... ( -20.80)
>DroSim_CAF1 55837 90 + 1
GUAUGGAUGUACAAACAUAUUUAUGUACAUUAUGCAAGGAUUUCCCAAGAUGACGAAAUUCAAGCACACUCUUGCACAAAACGGCAUAAA
.....((((((((..........))))))))((((..(((((((..........)))))))..(((......)))........))))... ( -17.40)
>DroEre_CAF1 56331 76 + 1
--------------CGAUACAUUCGUGCAUUAUGCAAGGAUUUCCCAAGAUGACGAAAUUCAAGCACAUUCGUGGACAAAACAGCAUAAA
--------------(((.....)))....((((((..(((((((..........)))))))...(((....))).........)))))). ( -13.70)
>DroYak_CAF1 57277 76 + 1
--------------AGAUACAUUUGUACAUUAUGCAAGGAUUUCCUCAGAUGACGAAAUUCAAGCACACUCUUGCACAAAACAGCAUAAA
--------------...............((((((..(((((((.((....)).)))))))..(((......)))........)))))). ( -16.40)
>consensus
GUAUGGAUG_ACA_ACAUACAUAUGUACAUUAUGCAAGGAUUUCCCAAGAUGACGAAAUUCAAGCACACUCUUGCACAAAACGGCAUAAA
.............................((((((..(((((((..........)))))))..(((......)))........)))))). (-10.76 = -11.16 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:26 2006