Locus 6762

Sequence ID 3L_DroMel_CAF1
Location 18,147,440 – 18,147,532
Length 92
Max. P 0.566921
window10993

overview

Window 3

Location 18,147,440 – 18,147,532
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 89.02
Mean single sequence MFE -18.98
Consensus MFE -15.40
Energy contribution -15.84
Covariance contribution 0.44
Combinations/Pair 1.23
Mean z-score -1.41
Structure conservation index 0.81
SVM decision value 0.07
SVM RNA-class probability 0.566921
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18147440 92 + 23771897
UCUGCAUCCAAUUAGCCAACAGAUAAAAUGUACCUGUUCCCAUCACUGAUUAGGGAACCGCUGCUGUCAUUGCACCUUUUGUUGGUCGCCAU
..............(((((((((............((((((...........)))))).(.(((.......))).).)))))))))...... ( -20.40)
>DroSec_CAF1 50159 92 + 1
UCUCCAUCCAAUUAACCAGCAAAUAAAAUGUACCUGUUCCCAUCACUGAUUAAGGAACCGCUGCUGUCAUUGCACCUUUUGUUGGGCGCCAU
...............((((((((............(((((.(((...)))...))))).(.(((.......))).).))))))))....... ( -15.90)
>DroSim_CAF1 47618 92 + 1
UCUCCAUCCAAUUUACCAGCAAAUAAAAUGUACCUGUUCCCAUCACUGAUUAGGGAACCGCUGCUGUCAUUACACCUUUUGUUGGGCGCCAU
...............((((((((......(((.(.((((((...........)))))).).)))(((....)))...))))))))....... ( -18.90)
>DroEre_CAF1 50807 92 + 1
UCUGCACCCAAGUACCUAACAAAUAAAAAGUACCUUUUCCCAUCACUGAUUAGGGAACCACUGCUGUCAUUGCACCUUUUGUUGGGCGCCAU
...........(..(((((((((.............(((((...........)))))....(((.......)))...)))))))))..)... ( -18.70)
>DroYak_CAF1 51839 92 + 1
CAUCUAUUCAAGUACCUAACAAAUAAUAUGUACCUAUUCCCAUCCCUGAUCAGGGAACCACUGCUGUCAUUGCACCUUUUGUUGGGCGCCAU
...........(..(((((((((...................(((((....))))).....(((.......)))...)))))))))..)... ( -21.00)
>consensus
UCUCCAUCCAAUUAACCAACAAAUAAAAUGUACCUGUUCCCAUCACUGAUUAGGGAACCGCUGCUGUCAUUGCACCUUUUGUUGGGCGCCAU
..............(((((((((......(((.(.((((((...........)))))).).)))(((....)))...)))))))))...... (-15.40 = -15.84 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:23 2006