Locus 6761

Sequence ID 3L_DroMel_CAF1
Location 18,135,282 – 18,135,380
Length 98
Max. P 0.590172
window10992

overview

Window 2

Location 18,135,282 – 18,135,380
Length 98
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.26
Mean single sequence MFE -22.78
Consensus MFE -12.48
Energy contribution -13.37
Covariance contribution 0.89
Combinations/Pair 1.06
Mean z-score -1.84
Structure conservation index 0.55
SVM decision value 0.11
SVM RNA-class probability 0.590172
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18135282 98 + 23771897
AAGAAGCCACAGCCCAUGGCCAAAACGAAAACGGUCACAACAGUUGGCCAAGUGAAGCUCUGU---GGUUUCUG--AAAGGAGAAUAAAACAAUAGCAUUUAG
.(((((((((((....(((((((..((....))((....))..)))))))((.....))))))---))))))).--........................... ( -25.10)
>DroGri_CAF1 50952 93 + 1
AAAAAGCCACAGCCCAUGGCAAACACAAAGACGGUGACAACUGUUGGCCAAGUGAAGCUCUGC---UGUUUCUGCAAAGAAAUUACAAACAA---A----UAU
.....(((...(((...))).........((((((....)))))))))...((((..((.(((---.......))).))...))))......---.----... ( -19.70)
>DroEre_CAF1 38712 98 + 1
AAGAAGCCACAGCCCAUGGCCAAGACGAAAACGGUCACAACAGUUGGCCAAGUGAAGCUCUGC---GGUUUCUG--GAAGGAGAAGACAAAAAUGGCAUUUAG
.(((((((.(((....((((((((((.......))).......)))))))((.....))))).---))))))).--........................... ( -22.31)
>DroWil_CAF1 99578 93 + 1
AAGAAACCGCAGCCCAUGGCAAGUACGAAAACGGUCACAACUGUUGGCCAAGUGAAACUCUGUGGUGGUUUCUG--CAAACAAAACAAAAAAAAA--------
.(((((((((.(((...)))............((((((....).)))))...............))))))))).--...................-------- ( -22.20)
>DroYak_CAF1 39451 98 + 1
AAGAAGCCACAGCCCAUGGCCAAGACGAAAACGGUCACAACAGUUGGCCAAGUGAAGCUCUGU---GGUUUCUG--GAAGGAGAAUAAAAAAAUUACAUUUAG
.(((((((((((....((((((((((.......))).......)))))))((.....))))))---))))))).--........................... ( -26.21)
>DroAna_CAF1 50754 95 + 1
AAAAAUCCACAGCCCAUGGCCAGAACGAAAACGGUGACAACAGUUGGCCAAGUGAAGCUCUGG---GGUUUCUG--GAAUUAAAAUAAAA---UCAAAUUUAG
.....((((.(((((.(((((((.........(....).....)))))))((.....))...)---))))..))--))............---.......... ( -21.14)
>consensus
AAGAAGCCACAGCCCAUGGCCAAAACGAAAACGGUCACAACAGUUGGCCAAGUGAAGCUCUGU___GGUUUCUG__GAAGGAGAAUAAAAAAAUAACAUUUAG
.(((((((...(((...)))............((((((....).))))).................))))))).............................. (-12.48 = -13.37 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:22 2006