Locus 6760

Sequence ID 3L_DroMel_CAF1
Location 18,132,287 – 18,132,378
Length 91
Max. P 0.688862
window10991

overview

Window 1

Location 18,132,287 – 18,132,378
Length 91
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 81.55
Mean single sequence MFE -32.77
Consensus MFE -23.78
Energy contribution -22.28
Covariance contribution -1.50
Combinations/Pair 1.42
Mean z-score -1.57
Structure conservation index 0.73
SVM decision value 0.32
SVM RNA-class probability 0.688862
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18132287 91 - 23771897
UUC-CUUUCGUGGCUACGGAUUAAGUGGCCAUAAUUGCUGCUCCUGCAGCC-GCGCCACGUGACUUGGUAACGGGAUACUGUGC-C--GGCCACGU
...-....(((((((.........(((((.......(((((....))))).-..))))).......((((.(((....))))))-)--))))))). ( -35.10)
>DroPse_CAF1 46039 96 - 1
UUCCCUUUUGUGGUUGCGGAUUAAAUGGCCGUAAUUGUUGCUCCUGCGGCCAGGGACACGCGACUCGGUAACGGGAUACGGGAUACGGAACCACGU
.((((..(((.(((((((..((...((((((((...........))))))))..))..))))))))))....)))).(((((........)).))) ( -33.10)
>DroSec_CAF1 35237 87 - 1
UUC-CUUUCGUGGCUGCGGAUUAAGUGGCCAUAAUUGCUGCUCCUGCAGCC-GCGCCACGCGACUUGGUAACGGGAUACUA-------GGCCACGU
...-....(((((((((((....((..((.......))..)).))))))))-)))..(((.(.(((((((......)))))-------)).).))) ( -34.00)
>DroYak_CAF1 36424 87 - 1
UUC-CUAUUGCGGCUGCGGAUUAAAUGGCCAUAAUUGCUGCUUCUGCAGCC-GCGCCACGCGACUUGGUAACGGGAUACUG-------GGCCACAU
...-.....(((((((((((......(((.......)))...)))))))))-))(((......((((....))))......-------)))..... ( -30.50)
>DroAna_CAF1 47788 87 - 1
UUC-CUUUCGUGGCCACGGAUUAAGUGGUCAUAAUUGCUGCUCCUGCAGCC-AGGACACGCGACCUGGUAACAGGAUACCC-------AGACACGU
...-.....((((((((.......))))))))...(((((.(((((..(((-(((........))))))..)))))....)-------)).))... ( -30.80)
>DroPer_CAF1 47186 96 - 1
UUCCCUUUUGUGGUUGCGGAUUAAAUGGCCGUAAUUGUUGCUCCUGCGGCCAGGGACACGCGACUCGGUAACGGGAUACGGGAUACGGAACCACGU
.((((..(((.(((((((..((...((((((((...........))))))))..))..))))))))))....)))).(((((........)).))) ( -33.10)
>consensus
UUC_CUUUCGUGGCUGCGGAUUAAAUGGCCAUAAUUGCUGCUCCUGCAGCC_GCGACACGCGACUUGGUAACGGGAUACUG_______AGCCACGU
........(((((((((((((((........)))))(((((....)))))........)))..((((....)))).............))))))). (-23.78 = -22.28 +  -1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:21 2006